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Gordonia phage MichaelScott
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Detailed Information for Phage MichaelScott
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJack McAuliffe
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature-7°C
GPS Coordinates40.441944 N, 79.9575 W Map
Discovery NotesI collected the soil sample near a restaurant named Chick'n Bubbly along Oakland Avenue on January 9th, 2017 at 11:12 a.m. The temperature when I collected this was 20 degrees Fahrenheit. It snowed on the previous day, therefore when I collected the sample, there was still a little snow around it. There was a small dead bush near my soil collection spot. The soil sample that I collected was on the surface and was somewhat dry.
Naming NotesMichael Scott is one of the main characters on NBC's television show "The Office."
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 25, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage200
Genome length (bp)48397
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTGCCAAGGGGA
GC Content66.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ4
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThe plaques generated by Phage MichaelScott have small, clear, haloed morphologies. The diameter of the plaques are 1mm in the clear center and 2mm including the halo. When the phage is initially present in lower concentrations, the region of turbidity surrounding the plaques are larger.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

MichaelScott_1
(HNH endonuclease)

MichaelScott_2
(terminase, small subunit)

MichaelScott_3
(terminase, large subunit)

MichaelScott_4
(portal protein)

MichaelScott_5
(capsid maturation protease)

MichaelScott_6
(scaffolding protein)

MichaelScott_7
(major capsid protein)

MichaelScott_8

MichaelScott_9
(head-to-tail adaptor)

MichaelScott_10
(head-to-tail stopper)

MichaelScott_11
(minor capsid protein)

MichaelScott_12
(tail terminator)

MichaelScott_13
(major tail protein)

MichaelScott_14

MichaelScott_15
(tail assembly chaperone)

MichaelScott_16
(tail assembly chaperone)

MichaelScott_17

MichaelScott_18
(tape measure protein)

MichaelScott_19
(minor tail protein)

MichaelScott_20
(minor tail protein)

MichaelScott_21
(lysin A)

MichaelScott_22

MichaelScott_23

MichaelScott_24

MichaelScott_25
(lysin B)

MichaelScott_26

MichaelScott_27

MichaelScott_28

MichaelScott_29

MichaelScott_30

MichaelScott_31

MichaelScott_32

MichaelScott_33

MichaelScott_34

MichaelScott_35

MichaelScott_36
(tyrosine integrase)

MichaelScott_37

MichaelScott_38

MichaelScott_39

MichaelScott_40
(tyrosine integrase)

MichaelScott_41
(helix-turn-helix DNA binding domain)

MichaelScott_42
(metalloprotease)

MichaelScott_43

MichaelScott_44
(immunity repressor)

MichaelScott_45
(helix-turn-helix DNA binding domain)

MichaelScott_46

MichaelScott_47
(antirepressor)

MichaelScott_48

MichaelScott_49

MichaelScott_50
(excise)

MichaelScott_51

MichaelScott_52

MichaelScott_53

MichaelScott_54
(RecE-like exonuclease)

MichaelScott_55
(RecT-like ssDNA binding protein)

MichaelScott_56

MichaelScott_57

MichaelScott_58

MichaelScott_59

MichaelScott_60

MichaelScott_61

MichaelScott_62

MichaelScott_63

MichaelScott_64

MichaelScott_65

MichaelScott_66
(helix-turn-helix DNA binding domain)

MichaelScott_67

MichaelScott_68

MichaelScott_69
(DNA binding protein)

MichaelScott_70

MichaelScott_71
(RusA-like resolvase (endonuclease))

MichaelScott_72

MichaelScott_73

MichaelScott_74

MichaelScott_75

MichaelScott_76
(helix-turn-helix DNA binding domain)

MichaelScott_77

MichaelScott_78

MichaelScott_79

MichaelScott_80
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT771346
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 56
Pitt Freezer Box Grid# A7
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload