Gordonia phage ThankyouJordi
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Detailed Information for Phage ThankyouJordi
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAyanna Barton
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.2638 N, 79.5718 W Map
Discovery NotesI adopted this phage from Jordi Swanson.
The soil collected was from a flower pot outside a university building.
Naming NotesSince I adopted this phage from Jordi Swanson, I named it ThankyouJordi because she was the one who gave it to me and the reason I could move forward with protocols in the laboratory.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 16, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage4321
Genome length (bp)53453
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGCTGGGGA
End Determination Notes2% of reads blast 100% to Lucky10
GC Content66.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesMedium Sized Plaques
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

ThankyouJordi_1
(terminase small subunit)

ThankyouJordi_2
(terminase large subunit)

ThankyouJordi_3

ThankyouJordi_4
(portal protein)

ThankyouJordi_5
(capsid maturation protease)

ThankyouJordi_6
(major capsid protein)

ThankyouJordi_7

ThankyouJordi_8
(head-to-tail adaptor)

ThankyouJordi_9
(head-to-tail stopper)

ThankyouJordi_10

ThankyouJordi_11
(tail terminator)

ThankyouJordi_12
(major tail protein)

ThankyouJordi_13
(tail assembly chaperone)

ThankyouJordi_14
(tail assembly chaperone)

ThankyouJordi_15

ThankyouJordi_16
(tape measure protein)

ThankyouJordi_17
(minor tail protein)

ThankyouJordi_18
(minor tail protein)

ThankyouJordi_19
(lysin A, L-Ala-D-Glu peptidase domain)

ThankyouJordi_20
(lysin A, glycosyl hydrolase domain)

ThankyouJordi_21

ThankyouJordi_22

ThankyouJordi_23

ThankyouJordi_24
(lysin B)

ThankyouJordi_25
(minor tail protein)

ThankyouJordi_26

ThankyouJordi_27
(minor tail protein)

ThankyouJordi_28

ThankyouJordi_29

ThankyouJordi_30

ThankyouJordi_31

ThankyouJordi_32

ThankyouJordi_33
(metalloprotease)

ThankyouJordi_34

ThankyouJordi_35

ThankyouJordi_36

ThankyouJordi_37

ThankyouJordi_38
(integrase)

ThankyouJordi_39

ThankyouJordi_40
(metalloprotease)

ThankyouJordi_41

ThankyouJordi_42
(methyltransferase)

ThankyouJordi_43
(immunity repressor)

ThankyouJordi_44
(helix-turn-helix DNA binding domain protein)

ThankyouJordi_45

ThankyouJordi_46

ThankyouJordi_47
(antirepressor)

ThankyouJordi_48

ThankyouJordi_49
(excise)

ThankyouJordi_50

ThankyouJordi_51

ThankyouJordi_52

ThankyouJordi_53

ThankyouJordi_54

ThankyouJordi_55

ThankyouJordi_56

ThankyouJordi_57

ThankyouJordi_58

ThankyouJordi_59
(RecE-like exonuclease)

ThankyouJordi_60
(RecT-like ssDNA binding protein)

ThankyouJordi_61

ThankyouJordi_62
(DnaQ-like DNA polymerase III subunit)

ThankyouJordi_63
(DnaJ-like chaperonin)

ThankyouJordi_64

ThankyouJordi_65
(DNA methylase)

ThankyouJordi_66

ThankyouJordi_67

ThankyouJordi_68

ThankyouJordi_69

ThankyouJordi_70

ThankyouJordi_71

ThankyouJordi_72

ThankyouJordi_73

ThankyouJordi_74
(RusA-like resolvase)

ThankyouJordi_75

ThankyouJordi_76

ThankyouJordi_77

ThankyouJordi_78
(helix-turn-helix DNA binding domain protein)

ThankyouJordi_79

ThankyouJordi_80

ThankyouJordi_81

ThankyouJordi_82

ThankyouJordi_83
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK801727
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 3
Pitt Freezer Box Grid# H3
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload