| Detailed Information for Phage RavenCo17 |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Alyssa Smith |
| Year Found | 2018 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.443881 N, 79.955294 W Map |
| Discovery Notes | My sample was collected in a flower garden bed outside of a building at my university. The patch of soil was surrounding many flowers and trees.Outside, it was really hot and the sky was cloudless. The soil was very dry at the surface, but as I dug down deeper, it became more and more moist. The surface of the soil contained many small mulch pieces as well. |
| Naming Notes | My favorite childhood dog's name was Raven, and she died just few years ago. I live in Bucks County, so that is where "Co" came from. Lastly, my favorite number is 17. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 25, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1543 |
| Genome length (bp) | 49663 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 10 bases |
| Overhang Sequence | CGGCTGGGGA |
| GC Content | 66.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CZ |
| Subcluster | CZ8 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | University of California, Los Angeles |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques in my plaque purification appeared very small in size. They were also very circular and were white/clear in color. |
| Number of Genes | 74 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | OP434446 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
91 |
| Pitt Freezer Box Grid# |
A4 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |