Gordonia phage Thimann
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Detailed Information for Phage Thimann
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found ByJackson Dewitt
Year Found2021
Location FoundSanta Cruz, CA Santa Cruz
Finding InstitutionUniversity of California, Santa Cruz
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates34.414 N, 119.8489 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 25, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1391
Genome length (bp)48046
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTGCCAAGGGGA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ4
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionNeumann University
Annotation StatusIn GenBank
Number of Genes80
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Thimann_1
(HNH endonuclease)

Thimann_2
(Terminase small subunit)

Thimann_3
(Terminase large subunit)

Thimann_4
(portal protein)

Thimann_5
(capsid maturation protease)

Thimann_6
(scaffolding protein)

Thimann_7
(major capsid protein)

Thimann_8

Thimann_9
(head-to-tail adaptor)

Thimann_10
(head-to-tail stopper)

Thimann_11

Thimann_12
(tail terminator)

Thimann_13
(major tail protein)

Thimann_14

Thimann_15
(tail assembly chaperone)

Thimann_16

Thimann_17

Thimann_18
(tape measure protein)

Thimann_19
(minor tail protein)

Thimann_20
(minor tail protein)

Thimann_21
(lysin A)

Thimann_22

Thimann_23

Thimann_24

Thimann_25
(lysin B)

Thimann_26
(minor tail protein)

Thimann_27

Thimann_28

Thimann_29

Thimann_30

Thimann_31
(helix-turn-helix DNA binding domain protein)

Thimann_32

Thimann_33

Thimann_34
(tyrosine integrase)

Thimann_35

Thimann_36
(tyrosine integrase)

Thimann_37
(helix-turn-helix DNA binding domain protein)

Thimann_38
(metalloprotease)

Thimann_39

Thimann_40

Thimann_41
(immunity repressor)

Thimann_42
(Cro protein)

Thimann_43

Thimann_44
(antirepressor)

Thimann_45

Thimann_46

Thimann_47
(excise)

Thimann_48

Thimann_49

Thimann_50

Thimann_51

Thimann_52

Thimann_53

Thimann_54

Thimann_55

Thimann_56
(RecE-like exonuclease)

Thimann_57
(RecT-like ssDNA pairing protein)

Thimann_58

Thimann_59

Thimann_60

Thimann_61

Thimann_62

Thimann_63

Thimann_64

Thimann_65
(DNA binding protein)

Thimann_66

Thimann_67

Thimann_68
(HNH endonuclease)

Thimann_69
(RepA-like replication initiator)

Thimann_70
(helicase loader)

Thimann_71
(RusA-like resolvase)

Thimann_72

Thimann_73
(DNA binding protein)

Thimann_74

Thimann_75
(MerR-like helix-turn-helix DNA binding domain protein)

Thimann_76

Thimann_77

Thimann_78

Thimann_79

Thimann_80
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOR253906
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
GenBank File for PhameratorDownload