Gordonia phage BoyNamedSue
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Detailed Information for Phage BoyNamedSue
Discovery Information
Isolation HostGordonia terrae 3612
Found BySydney Clark
Year Found2018
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature18°C
GPS Coordinates40.444364 N, 79.952489 W Map
Naming NotesNamed after a Johnny Cash song.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 10, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage1503
Genome length (bp)52698
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGCTGGGGA
GC Content66.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionMitchell Community College
Annotation StatusIn GenBank
Plaque NotesProlate Capsid
MorphotypeSiphoviridae
Number of Genes82
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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BoyNamedSue_1
(terminase small subunit)

BoyNamedSue_2
(terminase large subunit)

BoyNamedSue_3

BoyNamedSue_4
(portal protein)

BoyNamedSue_5
(capsid maturation protease)

BoyNamedSue_6
(major capsid protein)

BoyNamedSue_7

BoyNamedSue_8
(head-to-tail adaptor)

BoyNamedSue_9
(head-to-tail stopper)

BoyNamedSue_10

BoyNamedSue_11
(tail terminator)

BoyNamedSue_12
(major tail protein)

BoyNamedSue_13

BoyNamedSue_14
(tail assembly chaperone)

BoyNamedSue_15
(tail assembly chaperone)

BoyNamedSue_16

BoyNamedSue_17
(tape measure protein)

BoyNamedSue_18
(minor tail protein)

BoyNamedSue_19
(minor tail protein)

BoyNamedSue_20
(lysin A, L-Ala-D-Glu peptidase domain)

BoyNamedSue_21
(lysin A, glycosyl hydrolase domain)

BoyNamedSue_22

BoyNamedSue_23

BoyNamedSue_24

BoyNamedSue_25

BoyNamedSue_26
(lysin B)

BoyNamedSue_27
(minor tail protein)

BoyNamedSue_28

BoyNamedSue_29
(minor tail protein)

BoyNamedSue_30

BoyNamedSue_31

BoyNamedSue_32

BoyNamedSue_33

BoyNamedSue_34

BoyNamedSue_35

BoyNamedSue_36

BoyNamedSue_37

BoyNamedSue_38

BoyNamedSue_39
(tyrosine integrase)

BoyNamedSue_40

BoyNamedSue_41
(DNA binding protein)

BoyNamedSue_42

BoyNamedSue_43
(helix-turn-helix DNA-binding domain protein)

BoyNamedSue_44
(immunity repressor)

BoyNamedSue_45
(helix-turn-helix DNA-binding domain protein)

BoyNamedSue_46

BoyNamedSue_47

BoyNamedSue_48
(antirepressor)

BoyNamedSue_49

BoyNamedSue_50

BoyNamedSue_51

BoyNamedSue_52

BoyNamedSue_53

BoyNamedSue_54

BoyNamedSue_55

BoyNamedSue_56
(DnaQ-like DNA polymerase III subunit)

BoyNamedSue_57

BoyNamedSue_58
(RecE-like exonuclease)

BoyNamedSue_59
(RecT-like ssDNA binding protein)

BoyNamedSue_60

BoyNamedSue_61

BoyNamedSue_62

BoyNamedSue_63

BoyNamedSue_64

BoyNamedSue_65
(DNA methylase)

BoyNamedSue_66

BoyNamedSue_67

BoyNamedSue_68

BoyNamedSue_69

BoyNamedSue_70

BoyNamedSue_71

BoyNamedSue_72
(RusA-like resolvase)

BoyNamedSue_73

BoyNamedSue_74

BoyNamedSue_75

BoyNamedSue_76

BoyNamedSue_77
(helix-turn-helix DNA-binding domain protein)

BoyNamedSue_78

BoyNamedSue_79

BoyNamedSue_80

BoyNamedSue_81

BoyNamedSue_82
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW712717
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 89
Pitt Freezer Box Grid# H1
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload