Mycobacterium phage DirkDirk
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage DirkDirk
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByMadison Risi, Lisa Mitchell, D. Nicke, A. Tubman
Year Found2017
Location FoundBoulder, CO USA
Finding InstitutionUniversity of Colorado at Boulder
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.001 N, 105.27 W Map
Discovery NotesFlower pot in front of Norlin Library on CU Boulder campus containing moist soil, mulch, and some trash. Collected by Daria Nicke.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 1, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage689
Genome length (bp)68021
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGAACGGCC
GC Content58.7%
Sequencing NotesThis phage was sequenced as part of a mixed DOGEMS sample. The sequence of this genome was confirmed to belong to this phage by PCR.
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Colorado at Boulder
Annotation StatusIn GenBank
Plaque NotesTurbid, 2-5 mm in diameter
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

DirkDirk_1

DirkDirk_2
(terminase small subunit)

DirkDirk_3

DirkDirk_4
(terminase large subunit)

DirkDirk_5
(portal protein)

DirkDirk_6
(capsid maturation protease)

DirkDirk_7
(scaffolding protein)

DirkDirk_8
(major capsid protein)

DirkDirk_9
(head-to-tail adaptor)

DirkDirk_10
(head-to-tail stopper)

DirkDirk_11

DirkDirk_12
(tail terminator)

DirkDirk_13
(major tail subunit)

DirkDirk_14
(tail assembly chaperone)

DirkDirk_15
(tail assembly chaperone)

DirkDirk_16
(tape measure protein)

DirkDirk_17
(minor tail protein)

DirkDirk_18
(minor tail protein)

DirkDirk_19
(minor tail protein)

DirkDirk_20
(minor tail protein)

DirkDirk_21
(minor tail protein)

DirkDirk_22

DirkDirk_23

DirkDirk_24
(hydrolase)

DirkDirk_25
(lysin A)

DirkDirk_26
(lysin B)

DirkDirk_27
(holin)

DirkDirk_28

DirkDirk_29

DirkDirk_30
(NrdH-like glutaredoxin)

DirkDirk_31

DirkDirk_32
(nucleotitdyl transferase)

DirkDirk_33

DirkDirk_34

DirkDirk_35
(integrase)

DirkDirk_36
(helix-turn-helix DNA binding protein)

DirkDirk_37
(immunity repressor)

DirkDirk_38
(Cro protein)

DirkDirk_39
(excise)

DirkDirk_40

DirkDirk_41

DirkDirk_42

DirkDirk_43

DirkDirk_44

DirkDirk_45
(esterase)

DirkDirk_46

DirkDirk_47

DirkDirk_48
(band7-like membrane protein)

DirkDirk_49

DirkDirk_50

DirkDirk_51

DirkDirk_52

DirkDirk_53

DirkDirk_54

DirkDirk_55

DirkDirk_56
(exonuclease)

DirkDirk_57
(helix-turn-helix DNA binding domain protein)

DirkDirk_58
(helix-turn-helix DNA binding domain protein)

DirkDirk_59

DirkDirk_60

DirkDirk_61

DirkDirk_62

DirkDirk_63
(HNH endonuclease)

DirkDirk_64

DirkDirk_65
(helicase)

DirkDirk_66
(WhiB family transcription factor)

DirkDirk_67

DirkDirk_68

DirkDirk_69
(phosphoribosyl transferase)

DirkDirk_70
(nicotinate ribosyltransferase)

DirkDirk_71

DirkDirk_72
(polynucleotide kinase)

DirkDirk_73

DirkDirk_74
(RusA-like resolvase)

DirkDirk_75
(WhiB family transcription factor)

DirkDirk_76
(WhiB family transcription factor)

DirkDirk_77

DirkDirk_78

DirkDirk_79
(ssDNA binding protein)

DirkDirk_80

DirkDirk_81

DirkDirk_82

DirkDirk_83
(RNA ligase)

DirkDirk_84

DirkDirk_85

DirkDirk_86

DirkDirk_87

DirkDirk_88
(HNH endonuclease)

DirkDirk_89

DirkDirk_90

DirkDirk_91
(DNA polymerase)

DirkDirk_92

DirkDirk_93

DirkDirk_94
(HNH endonuclease)

DirkDirk_95

DirkDirk_96

DirkDirk_97

DirkDirk_98

DirkDirk_99

DirkDirk_102

DirkDirk_108

DirkDirk_109

DirkDirk_111

DirkDirk_113

DirkDirk_114

DirkDirk_115

DirkDirk_116
(AAA-ATPase)

DirkDirk_117

DirkDirk_118

DirkDirk_119

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN617841
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 62
Pitt Freezer Box Grid# F4
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload