Mycobacterium phage UPIE
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Detailed Information for Phage UPIE
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByShelby Paulson
Year Found2009
Location FoundCorvallis, OR USA
Finding InstitutionOregon State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates44.565454 N, 123.275549 W Map
Discovery NotesDamp, dark soil next to plants and a pond next to the Oregon State library. 55°F
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 17, 2011
Sequencing FacilityJoint Genomics Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)73784
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
GC Content58.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque Notes1-2mm; clear; incubated at 37 ºC usually for 20-24 hours
MorphotypeSiphoviridae
Number of Genes122
Number of tRNAs9
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJF704113
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2009ORSUupieSNP
SEA Lysate Titer 2.1e11
Pitt Freezer Box# 3
Pitt Freezer Box Grid# C6
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload