Mycobacterium phage Jubie
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Detailed Information for Phage Jubie
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySamantha Varenkamp
Year Found2019
Location FoundPort St. Lucie, FL USA
Finding InstitutionIndian River State College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates27.32 N, 80.4 W Map
Discovery NotesMy phage was found in moist soil that contained some grass. It was found behind the school campus.
Naming NotesNamed after my cat.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 23, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1446
Genome length (bp)75782
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGATCAGCC
GC Content59.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL3
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionIndian River State College
Annotation StatusIn GenBank
Plaque NotesPlaques are turbid and clear.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Jubie_1

Jubie_2
(terminase, small subunit)

Jubie_3

Jubie_4

Jubie_5
(terminase, large subunit)

Jubie_6
(portal protein)

Jubie_7
(capsid maturation protease)

Jubie_8
(scaffolding protein)

Jubie_9
(major capsid protein)

Jubie_10
(head-to-tail adaptor)

Jubie_11
(head-to-tail stopper)

Jubie_12

Jubie_13
(tail terminator)

Jubie_14
(major tail protein)

Jubie_15
(tail assembly chaperone)

Jubie_16
(tail assembly chaperone)

Jubie_17
(tape measure protein)

Jubie_18
(minor tail protein)

Jubie_19
(minor tail protein)

Jubie_20
(minor tail protein)

Jubie_21
(minor tail protein)

Jubie_22
(minor tail protein)

Jubie_23

Jubie_24

Jubie_25

Jubie_26
(lysin A)

Jubie_27
(holin)

Jubie_28
(lysin B)

Jubie_29

Jubie_30

Jubie_31
(NrdH-like glutaredoxin)

Jubie_32

Jubie_33
(Nucleotidyl transferase)

Jubie_34
(Lsr2-like DNA bridging protein)

Jubie_35

Jubie_36
(tyrosine integrase)

Jubie_37

Jubie_38
(immunity repressor)

Jubie_39
(helix-turn-helix DNA binding domain)

Jubie_40
(excise)

Jubie_41

Jubie_42

Jubie_43

Jubie_44
(metallophosphoesterase)

Jubie_45

Jubie_46

Jubie_47

Jubie_48
(membrane protein, Band-7 -like)

Jubie_50

Jubie_51

Jubie_52

Jubie_53

Jubie_54
(Ro-like RNA binding protein)

Jubie_55

Jubie_56

Jubie_57

Jubie_58

Jubie_59

Jubie_60
(RecB-like exonuclease/helicase)

Jubie_61
(ssDNA binding protein, ERF family)

Jubie_62

Jubie_63
(ParB-like nuclease domain)

Jubie_64

Jubie_65
(HNH endonuclease)

Jubie_66

Jubie_67

Jubie_68
(DNAB-like dsDNA helicase)

Jubie_69
(WhiB family transcription factor)

Jubie_70

Jubie_71

Jubie_72

Jubie_73
(phosphoribosyl transferase)

Jubie_74
(nicotinate ribosyltransferase)

Jubie_75
(polynucleotide kinase)

Jubie_76

Jubie_77
(RusA-like resolvase (endonuclease))

Jubie_78
(WhiB family transcription factor)

Jubie_79
(WhiB family transcription factor)

Jubie_80

Jubie_81

Jubie_82

Jubie_83
(ssDNA binding protein)

Jubie_84
(toxin in toxin/antitoxin system, HicA-like)

Jubie_85
(RNA ligase)

Jubie_86
(ClpP-like protease)

Jubie_87

Jubie_88

Jubie_89

Jubie_90
(helix-turn-helix DNA binding domain)

Jubie_91
(HNH endonuclease)

Jubie_92

Jubie_93

Jubie_94
(DnaQ-like (DNA polymerase III subunit))

Jubie_95

Jubie_96

Jubie_97

Jubie_98
(HNH endonuclease)

Jubie_99

Jubie_100

Jubie_101

Jubie_102

Jubie_104

Jubie_106

Jubie_110

Jubie_113

Jubie_114

Jubie_117

Jubie_118

Jubie_119

Jubie_120

Jubie_121

Jubie_122

Jubie_123

Jubie_124

Jubie_125

Jubie_126

Jubie_127

Jubie_128

Jubie_129

Jubie_130

Jubie_131

Jubie_132

Jubie_133

Jubie_134

Jubie_135
(AAA-ATPase)

Jubie_136

Jubie_137

Jubie_138

Jubie_139

Jubie_140

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMW291024
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 98
Pitt Freezer Box Grid# A6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload