Mycobacterium phage JoeDirt
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Detailed Information for Phage JoeDirt
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByStephen Streppone
Year Found2009
Location FoundWoodhaven, NY USA
Finding InstitutionCUNY, Queens College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.693857 N, 73.858388 W Map
Discovery NotesIvy grows in the same soils as where that sample was taken.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 23, 2010
Genome length (bp)74914
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGAACGGCC
GC Content58.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque Notes0.5-1.5 mm clear
plaques
MorphotypeSiphoviridae
Number of Genes113
Number of tRNAs9
Has been Phamerated?Yes
Gene List

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JoeDirt_1

JoeDirt_2

JoeDirt_3

JoeDirt_4
(terminase)

JoeDirt_5
(portal protein)

JoeDirt_6
(protease)

JoeDirt_7
(scaffold protein)

JoeDirt_8
(major capsid protein)

JoeDirt_9

JoeDirt_10

JoeDirt_11

JoeDirt_12

JoeDirt_13
(major tail subunit)

JoeDirt_14
(tail assembly chaperone)

JoeDirt_15
(tail assembly chaperone)

JoeDirt_16
(tapemeasure protein)

JoeDirt_17

JoeDirt_18

JoeDirt_19

JoeDirt_20
(minor tail protein)

JoeDirt_21
(minor tail protein)

JoeDirt_22

JoeDirt_23

JoeDirt_24

JoeDirt_25
(lysin A)

JoeDirt_26
(lysin B)

JoeDirt_27

JoeDirt_28
(holin)

JoeDirt_29

JoeDirt_30
(NrdH)

JoeDirt_31

JoeDirt_32
(nucleotidyltransferase)

JoeDirt_33

JoeDirt_34

JoeDirt_35
(integrase)

JoeDirt_36

JoeDirt_37

JoeDirt_38

JoeDirt_39

JoeDirt_40

JoeDirt_41

JoeDirt_42

JoeDirt_43

JoeDirt_44

JoeDirt_45
(esterase)

JoeDirt_46

JoeDirt_47

JoeDirt_48

JoeDirt_49

JoeDirt_50

JoeDirt_51

JoeDirt_52

JoeDirt_53

JoeDirt_54

JoeDirt_55

JoeDirt_56

JoeDirt_57

JoeDirt_58

JoeDirt_59
(antirepressor)

JoeDirt_60
(Erf)

JoeDirt_61

JoeDirt_62

JoeDirt_63

JoeDirt_64

JoeDirt_65

JoeDirt_66

JoeDirt_67

JoeDirt_68
(DnaB-like helicase)

JoeDirt_69

JoeDirt_70

JoeDirt_71

JoeDirt_72
(putative ribose phosphate kinase)

JoeDirt_73
(putative nicotinate phosphoribosyl transferase)

JoeDirt_74

JoeDirt_75
(kinase)

JoeDirt_76

JoeDirt_77
(RusA)

JoeDirt_78

JoeDirt_79
(WhiB)

JoeDirt_80

JoeDirt_81

JoeDirt_82

JoeDirt_83
(ssDNA binding protein)

JoeDirt_84

JoeDirt_85

JoeDirt_86

JoeDirt_87

JoeDirt_88

JoeDirt_89

JoeDirt_90

JoeDirt_91

JoeDirt_92

JoeDirt_93

JoeDirt_94

JoeDirt_95
(DNA polymerase II)

JoeDirt_96

JoeDirt_97

JoeDirt_98

JoeDirt_99

JoeDirt_100

JoeDirt_101

JoeDirt_102

JoeDirt_105

JoeDirt_109

JoeDirt_111

JoeDirt_112

JoeDirt_114

JoeDirt_115

JoeDirt_118

JoeDirt_119

JoeDirt_120

JoeDirt_121

JoeDirt_122

JoeDirt_123

JoeDirt_124

JoeDirt_125

JoeDirt_126

JoeDirt_127

JoeDirt_128

JoeDirt_129

JoeDirt_130

JoeDirt_131
(ATPase)

JoeDirt_132

JoeDirt_133

JoeDirt_134

JoeDirt_135

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJF704108
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2009CUNYjoedirtSS
SEA Lysate Titer 1.4e11
Date of SEA Lysate Titering Nov 21, 2009
Pitt Freezer Box# 2
Pitt Freezer Box Grid# B4
Available Files
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload