Detailed Information for Phage Jobypre |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Christa Joby |
Year Found | 2022 |
Location Found | Charleston, SC United States |
Finding Institution | College of Charleston |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 37°C |
GPS Coordinates | 32.786463 N, 79.938603 W Map |
Discovery Notes | Soil sample taken from the base of a palmetto tree on the side of the road in Charleston, SC. Weather was 85˚F with slight humidity. Soil was moist because it had been raining. Nearby vegetation included a few bushes and trees. |
Naming Notes | This phage is named after my father. His first name is Joby. I added "pre" so that the name would be accepted since there was already a phage named Joby. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Feb 20, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 57 |
Genome length (bp) | 75624 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | TCGATCAGCC |
GC Content | 59.3% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | L |
Subcluster | L3 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | College of Charleston |
Annotation Status | Being Annotated (Expected completion by 5/1/2025) |
Morphotype | Siphoviridae |
Number of Genes | 133 |
Number of tRNAs | 10 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
163 |
Pitt Freezer Box Grid# |
H8 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |