Mycobacterium phage Jobypre
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Jobypre
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByChrista Joby
Year Found2022
Location FoundCharleston, SC United States
Finding InstitutionCollege of Charleston
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates32.786463 N, 79.938603 W Map
Discovery NotesSoil sample taken from the base of a palmetto tree on the side of the road in Charleston, SC. Weather was 85˚F with slight humidity. Soil was moist because it had been raining. Nearby vegetation included a few bushes and trees.
Naming NotesThis phage is named after my father. His first name is Joby. I added "pre" so that the name would be accepted since there was already a phage named Joby.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 20, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage57
Genome length (bp)75624
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGATCAGCC
GC Content59.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL3
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionCollege of Charleston
Annotation StatusBeing Annotated (Expected completion by 5/1/2025)
MorphotypeSiphoviridae
Number of Genes133
Number of tRNAs10
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Jobypre_1

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Jobypre_50 — tRNA
(gp50)

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Jobypre_104 — tRNA
(gp104)

Jobypre_105

Jobypre_106 — tRNA
(gp106)

Jobypre_107

Jobypre_108 — tRNA
(gp108)

Jobypre_109 — tRNA
(gp109)

Jobypre_110 — tRNA
(gp110)

Jobypre_111

Jobypre_112 — tRNA
(gp112)

Jobypre_113 — tRNA
(gp113)

Jobypre_114

Jobypre_115

Jobypre_116 — tRNA
(gp116)

Jobypre_117 — tRNA
(gp117)

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Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 163
Pitt Freezer Box Grid# H8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload