Mycobacterium phage CicholasNage
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Detailed Information for Phage CicholasNage
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPaul Lee
Year Found2017
Location FoundBlacksburg, VA USA
Finding InstitutionVirginia Tech
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates37.221 N, 80.419 W Map
Discovery NotesFound in the end zone of Lane Stadium of Virginia Tech.
Naming NotesThis phage is not named after Nicholas Cage, but inspired by him.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 4, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage952
Genome length (bp)71059
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGAACGGCC
GC Content58.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesMedium sized, lytic plaques.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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CicholasNage_1

CicholasNage_2
(terminase small subunit)

CicholasNage_3

CicholasNage_4
(terminase large subunit)

CicholasNage_5
(portal protein)

CicholasNage_6
(capsid maturation protease)

CicholasNage_7
(scaffolding protein)

CicholasNage_8
(major capsid protein)

CicholasNage_9
(head-to-tail connector complex protein)

CicholasNage_10

CicholasNage_11

CicholasNage_12

CicholasNage_13
(major tail protein)

CicholasNage_14
(tail assembly chaperone)

CicholasNage_15
(tail assembly chaperone)

CicholasNage_16
(tape measure protein)

CicholasNage_17
(minor tail protein)

CicholasNage_18
(minor tail protein)

CicholasNage_19
(minor tail protein)

CicholasNage_20
(minor tail protein)

CicholasNage_21
(minor tail protein)

CicholasNage_22

CicholasNage_23

CicholasNage_24

CicholasNage_25
(lysin A)

CicholasNage_26
(lysin B)

CicholasNage_27

CicholasNage_28

CicholasNage_29

CicholasNage_30
(NrdH-like glutaredoxin)

CicholasNage_31

CicholasNage_32
(nucleotidyltransferase)

CicholasNage_33

CicholasNage_34

CicholasNage_35

CicholasNage_36
(integrase)

CicholasNage_37

CicholasNage_38

CicholasNage_39
(Cro protein)

CicholasNage_40
(excise)

CicholasNage_41

CicholasNage_42

CicholasNage_43

CicholasNage_44

CicholasNage_45

CicholasNage_46
(esterase)

CicholasNage_47

CicholasNage_48

CicholasNage_49

CicholasNage_50

CicholasNage_51

CicholasNage_52

CicholasNage_53

CicholasNage_54

CicholasNage_55

CicholasNage_56

CicholasNage_57

CicholasNage_58
(exonuclease)

CicholasNage_59
(antirepressor)

CicholasNage_60

CicholasNage_61

CicholasNage_62

CicholasNage_63

CicholasNage_64

CicholasNage_65

CicholasNage_66
(DNA helicase)

CicholasNage_67

CicholasNage_68

CicholasNage_69
(phosphoribosyl pyrophosphate transferase)

CicholasNage_70
(nicotinamide phosphoribosyltransferase)

CicholasNage_71

CicholasNage_72
(polynucleotide kinase)

CicholasNage_73

CicholasNage_74
(RusA-like resolvase)

CicholasNage_75
(WhiB family transcription factor)

CicholasNage_76
(WhiB family transcription factor)

CicholasNage_77

CicholasNage_78

CicholasNage_79
(SSDNA binding protein)

CicholasNage_80

CicholasNage_81

CicholasNage_82

CicholasNage_83

CicholasNage_84

CicholasNage_85

CicholasNage_86

CicholasNage_87

CicholasNage_88
(HNH endonuclease)

CicholasNage_89

CicholasNage_90

CicholasNage_91
(DNA polymerase III subunit)

CicholasNage_92

CicholasNage_93

CicholasNage_94
(HNH endonuclease)

CicholasNage_95

CicholasNage_96

CicholasNage_97

CicholasNage_98

CicholasNage_101

CicholasNage_103

CicholasNage_104

CicholasNage_105

CicholasNage_107

CicholasNage_108

CicholasNage_109

CicholasNage_111

CicholasNage_112

CicholasNage_113

CicholasNage_114

CicholasNage_115

CicholasNage_116

CicholasNage_117

CicholasNage_118

CicholasNage_119

CicholasNage_120

CicholasNage_121

CicholasNage_122

CicholasNage_123

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK310144
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 54
Pitt Freezer Box Grid# D10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload