Mycobacterium phage Whirlwind
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Detailed Information for Phage Whirlwind
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPhil Williams
Year Found2011
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.411667 N, 79.996667 W Map
Discovery NotesFound on a trail outside Eatn Park in Waterfront. Dry, Rocky soil.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 25, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage212
Sanger Finishing Reactions20
Genome length (bp)76050
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGATCAGCC
GC Content59.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL3
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesOdd clusters formed.
MorphotypeSiphoviridae
Number of Genes129
Number of tRNAs11
Has been Phamerated?Yes
Gene List

Click to View

Whirlwind_1

Whirlwind_3

Whirlwind_4

Whirlwind_5

Whirlwind_6
(terminase)

Whirlwind_7
(portal protein)

Whirlwind_8

Whirlwind_9
(scaffolding protein)

Whirlwind_10
(Capsid)

Whirlwind_11

Whirlwind_12

Whirlwind_13

Whirlwind_14

Whirlwind_15
(major tail subunit)

Whirlwind_16
(tail assembly chaperone)

Whirlwind_17
(tail assembly chaperone)

Whirlwind_18
(tape measure protein)

Whirlwind_19
(minor tail subunit)

Whirlwind_20
(minor tail subunit)

Whirlwind_21
(minor tail subunit)

Whirlwind_22

Whirlwind_23

Whirlwind_24

Whirlwind_25

Whirlwind_26

Whirlwind_27
(LysA)

Whirlwind_28

Whirlwind_29

Whirlwind_30

Whirlwind_31

Whirlwind_32
(NrdH-like protein)

Whirlwind_33

Whirlwind_34
(NrdC-like protein)

Whirlwind_35
(Lsr2)

Whirlwind_36

Whirlwind_37
(integrase)

Whirlwind_38

Whirlwind_39

Whirlwind_40
(DNA binding protein)

Whirlwind_41
(excise)

Whirlwind_42

Whirlwind_43

Whirlwind_44

Whirlwind_45

Whirlwind_46

Whirlwind_47

Whirlwind_48

Whirlwind_49
(band 7-like protein)

Whirlwind_51

Whirlwind_52

Whirlwind_53

Whirlwind_54

Whirlwind_55
(Von Willebrand factor-like protein)

Whirlwind_56
(putative secreted protein)

Whirlwind_57

Whirlwind_58

Whirlwind_59

Whirlwind_60

Whirlwind_61

Whirlwind_62
(ERF-like protein)

Whirlwind_63

Whirlwind_64

Whirlwind_65

Whirlwind_66
(HNH endonuclease)

Whirlwind_67

Whirlwind_68

Whirlwind_69

Whirlwind_70
(DNA helicase)

Whirlwind_71

Whirlwind_72

Whirlwind_73

Whirlwind_74
(phosphoribosyl-pyrophosphate transferase)

Whirlwind_75
(NAPRTase)

Whirlwind_76
(PNK protein)

Whirlwind_77

Whirlwind_78

Whirlwind_79
(RusA)

Whirlwind_80
(WhiB)

Whirlwind_81
(WhiB)

Whirlwind_82

Whirlwind_83

Whirlwind_84
(ssDNA binding protein)

Whirlwind_85

Whirlwind_86

Whirlwind_87
(RNA ligase)

Whirlwind_88
(ClpP)

Whirlwind_89

Whirlwind_90

Whirlwind_91

Whirlwind_92

Whirlwind_93
(HNH endonuclease)

Whirlwind_94

Whirlwind_95

Whirlwind_96
(DnaQ)

Whirlwind_97

Whirlwind_98

Whirlwind_99

Whirlwind_100

Whirlwind_101

Whirlwind_102

Whirlwind_103

Whirlwind_105

Whirlwind_107

Whirlwind_112

Whirlwind_115

Whirlwind_116

Whirlwind_119

Whirlwind_120

Whirlwind_121

Whirlwind_122

Whirlwind_123

Whirlwind_124

Whirlwind_125

Whirlwind_126

Whirlwind_127

Whirlwind_128

Whirlwind_129

Whirlwind_130

Whirlwind_131

Whirlwind_132

Whirlwind_133

Whirlwind_134

Whirlwind_135
(AAA ATPase)

Whirlwind_136

Whirlwind_137

Whirlwind_138

Whirlwind_139

Whirlwind_140

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF024725
Refseq NumberNC_022052
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 3
Pitt Freezer Box Grid# D2
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload