Mycobacterium phage Faith1
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Detailed Information for Phage Faith1
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJazmyn McCloud
Year Found2009
Location FoundAtlanta, GA USA
Finding InstitutionSpelman College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates34.73344 N, 84.400093 W Map
Discovery NotesLocated Spelman College campus at the back of Read Hall near trees. Soil depth 6cm. Temperature 72 degrees.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 28, 2011
Sequencing FacilityJoint Genomics Institute
Genome length (bp)75960
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGATCAGCC
GC Content58.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL2
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesPlaques were approximately 0.5cm in diameter, clear and circular shaped. Incubation was 24 hours and the temperature was 37 degrees Celsius
MorphotypeSiphoviridae
Number of Genes129
Number of tRNAs12
Has been Phamerated?Yes
Gene List

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Faith1_1

Faith1_2
(terminase small subunit)

Faith1_3

Faith1_4
(terminase large subunit)

Faith1_5
(portal protein)

Faith1_6

Faith1_7
(scaffolding protein)

Faith1_8
(major capsid protein)

Faith1_9

Faith1_10

Faith1_11

Faith1_12

Faith1_13
(major tail protein)

Faith1_14
(tail assembly chaperone)

Faith1_15
(tail assembly chaperone)

Faith1_16
(tapemeasure protein)

Faith1_17
(minor tail subunit)

Faith1_18
(minor tail subunit)

Faith1_19

Faith1_20

Faith1_21

Faith1_22

Faith1_23

Faith1_24
(structural protein)

Faith1_25

Faith1_26

Faith1_27
(lysin A)

Faith1_28
(lysin B)

Faith1_29

Faith1_30

Faith1_31

Faith1_32
(NrdH-like glutaredoxin)

Faith1_33

Faith1_34

Faith1_35
(NrdC-like nucleotidyltransferase)

Faith1_36
(Lsr2)

Faith1_37

Faith1_38
(integrase)

Faith1_39

Faith1_40

Faith1_41

Faith1_42

Faith1_43

Faith1_44

Faith1_45

Faith1_46

Faith1_47

Faith1_48

Faith1_49

Faith1_50

Faith1_51

Faith1_52

Faith1_53

Faith1_54

Faith1_55

Faith1_56

Faith1_57

Faith1_58

Faith1_59

Faith1_60

Faith1_61

Faith1_62

Faith1_63

Faith1_64

Faith1_65

Faith1_66

Faith1_67

Faith1_68

Faith1_69

Faith1_70
(DnaC-like DNA helicase)

Faith1_71

Faith1_72

Faith1_73

Faith1_74
(phosphoribosyl-pyrophosphate synthetase)

Faith1_75
(nicotinate phosphoribosyltransferase)

Faith1_76
(polynucleotide kinase)

Faith1_77

Faith1_78

Faith1_79

Faith1_80

Faith1_81
(WhiB family transcription factor)

Faith1_82
(WhiB family transcription factor)

Faith1_83

Faith1_84

Faith1_85
(single-stranded DNA binding protein)

Faith1_86

Faith1_87

Faith1_88
(RNA ligase)

Faith1_89

Faith1_90
(ClpP-like protease)

Faith1_91

Faith1_92

Faith1_93

Faith1_94

Faith1_95
(HNH endonuclease-like domain protein)

Faith1_96

Faith1_97

Faith1_98
(DnaQ-like protein)

Faith1_99

Faith1_100

Faith1_101

Faith1_102

Faith1_103

Faith1_105

Faith1_109

Faith1_115

Faith1_116

Faith1_118

Faith1_119

Faith1_121

Faith1_123

Faith1_124

Faith1_125

Faith1_126

Faith1_127

Faith1_128

Faith1_129

Faith1_130

Faith1_131

Faith1_132

Faith1_133

Faith1_134

Faith1_135

Faith1_136

Faith1_137

Faith1_138

Faith1_139

Faith1_140

Faith1_141

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJF744988
Refseq NumberNC_015584
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2008SPELhopeTJKY
Pitt Freezer Box# 1
Pitt Freezer Box Grid# G8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload