Mycobacterium phage Snenia
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Detailed Information for Phage Snenia
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySinenhlanhla Nonhlanzeko Mthembu
Year Found2014
Location FoundDurban, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates29.81722 S, 30.94528 E Map
Discovery NotesFrom the garden outside Physics block on campus. Lysate at 3rd round of purification
Naming NotesThis name came about on my first day at school ever (in grade 1), we had to write our names for the very first time without having to refer to our Identity books. So I give it to my mini-me.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 19, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2040
Genome length (bp)75626
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGATCAGCC
GC Content59.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL3
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesSmall clear plaques
MorphotypeSiphoviridae
Number of Genes130
Number of tRNAs10
Has been Phamerated?Yes
Gene List

Click to View

Snenia_1

Snenia_2

Snenia_3

Snenia_4

Snenia_5
(terminase large subunit)

Snenia_6
(portal protein)

Snenia_7

Snenia_8
(scaffolding protein)

Snenia_9
(major capsid protein)

Snenia_10
(head-to-tail adaptor)

Snenia_11
(head-to-tail stopper)

Snenia_12

Snenia_13
(tail terminator)

Snenia_14
(major tail protein)

Snenia_15
(tail assembly chaperone)

Snenia_16
(tail assembly chaperone)

Snenia_17
(tape measure protein)

Snenia_18
(minor tail protein)

Snenia_19
(minor tail protein)

Snenia_20
(minor tail protein)

Snenia_21
(minor tail protein)

Snenia_22
(minor tail protein)

Snenia_23

Snenia_24

Snenia_25

Snenia_26
(lysin A)

Snenia_27

Snenia_28
(lysin B)

Snenia_29

Snenia_30

Snenia_31
(NrdH glutaredoxin protein)

Snenia_32

Snenia_33
(nucleotidyltransferase)

Snenia_34
(Lsr2 DNA binding protein)

Snenia_35

Snenia_36
(integrase)

Snenia_37

Snenia_38
(immunity repressor)

Snenia_39

Snenia_40
(DNA binding protein)

Snenia_41

Snenia_42

Snenia_43

Snenia_44

Snenia_45

Snenia_46

Snenia_47

Snenia_48
(membrane protein band-7-like protein)

Snenia_50

Snenia_51

Snenia_52

Snenia_53

Snenia_54
(RNA binding protein)

Snenia_55

Snenia_56

Snenia_57

Snenia_58

Snenia_59

Snenia_60

Snenia_61

Snenia_62
(ERF family ssDNA binding protein)

Snenia_63

Snenia_64

Snenia_65
(HNH endonuclease)

Snenia_66

Snenia_67

Snenia_68
(DNA helicase)

Snenia_69

Snenia_70

Snenia_71

Snenia_72

Snenia_73
(ribose-phosphate pyrophosphokinase)

Snenia_74
(ribose-phosphate pyrophosphokinase)

Snenia_75
(polynucleotide kinase)

Snenia_76

Snenia_77
(HJ resolvase RusA-like protein)

Snenia_78
(WhiB family transcription factor)

Snenia_79
(WhiB family transcription factor)

Snenia_80

Snenia_81

Snenia_82

Snenia_83
(ssDNA binding protein)

Snenia_84

Snenia_85
(RNA ligase)

Snenia_86
(ClP protease)

Snenia_87

Snenia_88

Snenia_89

Snenia_90

Snenia_91
(HNH endonuclease)

Snenia_92

Snenia_93

Snenia_94
(DNA-Q exonuclease)

Snenia_95

Snenia_96

Snenia_97

Snenia_98

Snenia_99

Snenia_100

Snenia_101

Snenia_103

Snenia_105

Snenia_109

Snenia_112

Snenia_113

Snenia_116

Snenia_117

Snenia_118

Snenia_119

Snenia_120

Snenia_121

Snenia_122

Snenia_123

Snenia_124

Snenia_125

Snenia_126

Snenia_127

Snenia_128

Snenia_129

Snenia_130

Snenia_131

Snenia_132

Snenia_133

Snenia_134
(AAA-ATPase)

Snenia_135

Snenia_136

Snenia_137

Snenia_138

Snenia_139

Snenia_140

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKT281794
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 4
Pitt Freezer Box Grid# D3
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload