| Detailed Information for Phage Samman98 |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Samyuktha Manikandan |
| Year Found | 2017 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.446071 N, 79.955902 W Map |
| Discovery Notes | Weather conditions during collection:
20 degrees F, overcast, slightly windy
Weather conditions in 24 hours after collection:
high of 16 degrees F, low of 7 degrees F
The sample was immediately stored for 30 minutes prior to analysis.
Soil Conditions:
hard, cold, and snow was on ground during collection |
| Naming Notes | named after founder |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 16, 2020 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 230 |
| Genome length (bp) | 47548 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | TGCCAAGGGGA |
| GC Content | 66.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CZ |
| Subcluster | CZ4 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | North Carolina A & T State University |
| Annotation Status | In GenBank |
| Plaque Notes | The plaque itself is mostly circular. The plaque is cloudy on the periphery while the center is clear. The diameter is around 1.5 mm. |
| Number of Genes | 79 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MZ456039 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
56 |
| Pitt Freezer Box Grid# |
C7 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| GenBank File for Phamerator | Download |
