The Actinobacteriophage Database

Mycobacterium phage ABCat

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Detailed Information for Phage ABCat
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Catherine Cota
Year Found	2011
Location Found	New Haven, CT USA
Finding Institution	Southern Connecticut State University
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	37°C
GPS Coordinates	41.33 N, 72.948 W Map
Discovery Notes	Soil Sample Slightly Damp 3 cm deep 70°F
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 31, 2012
Sequencing Facility	Virginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method	454
Sequencer Used	454 Genome Sequencer FLX
Approximate Shotgun Coverage	170
Genome length (bp)	76131
Character of genome ends	3' Sticky Overhang
Overhang Length	9 bases
Overhang Sequence	CGCTTGTCA
GC Content	63.0%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	E
Subcluster	--
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View 244 ABCat Adnama Amao AmericanBeauty Argent26 Asriel BaboJay BadStone Balomoji Barbarian Bask21 Becksu Bench BigBubba BilboSwaggins Bogg Bruin Buck BugsBunny Cactus ChosenOne ChotaBhai Cjw1 Command613 Contagion Cookies CrystalP Czyszczon1 Daikon DoctorDiddles DrDrey Dumbo Dusk Easy2Say Elite2014 Elph10 Emmina Eureka FairyPath Filch FireRed Flypotenuse FoghornLeghorn Gage Gator Gemini Glexan Goku GoldenSpark Goldilocks GooberAzure HanKaySha Harella Henry Highbury Holt Hoonter Hopey HufflyPuff Icee IHOP Inca JeTaime Kanye Kimchi Kostya Lilac Lilizi Lilpickle MadamMonkfish Manda Marshmallow Maxxinista Mindy Miniwave Misfit MISSy Moldemort Mosby MPhalcon Murica Murphy Myrale Nala NelitzaMV Nimrod NoSleep OrionPax Palpatine Paperbeatsrock Pat3 Petra64142 Phaja Pharsalus PhatBacter Phaux Phrux Policronamos Porky Pumpkin Quallification Rakim Rimmer RiverMonster Saints25 Sassay ShamWow ShereKhan Simpliphy SirDuracell SophKB Sotrice96 Stank Stark StellaBean StolenFromERC StormChicken Tarkin TBrady12 TeardropMSU Teaspoon Terminus Thimble Thresher Tomaszewski Toto Traaww1 Tuco Ukulele Wiggin Willez Xandras xkcd YassJohnny Youngblood
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	1mm cloudy plaques at 48-72 hours
Morphotype	Siphoviridae
Number of Genes	143
Number of tRNAs	2
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View ABCat_1 ABCat_2 ABCat_3 ABCat_4 ABCat_5 (terminase small subunit) ABCat_6 ABCat_7 ABCat_8 (terminase large subunit) ABCat_9 ABCat_10 (portal protein) ABCat_11 (capsid maturation protease) ABCat_12 (major capsid protein) ABCat_13 ABCat_14 (head-to-tail adaptor) ABCat_15 (head-to-tail stopper) ABCat_16 ABCat_17 (tail terminator) ABCat_18 (major tail subunit) ABCat_19 (tail assembly chaperone) ABCat_20 (tail assembly chaperone) ABCat_21 (tape measure protein) ABCat_22 (minor tail protein) ABCat_23 (minor tail protein) ABCat_24 (minor tail protein) ABCat_25 (minor tail protein) ABCat_26 (minor tail protein) ABCat_27 ABCat_28 ABCat_29 ABCat_30 ABCat_31 (lysin A) ABCat_32 (holin) ABCat_33 ABCat_34 (lysin B) ABCat_35 ABCat_36 (NrdH-like glutaredoxin) ABCat_37 (HNH endonuclease) ABCat_38 (Lsr2-like DNA bridging protein) ABCat_39 ABCat_40 ABCat_41 ABCat_42 ABCat_43 ABCat_44 ABCat_45 ABCat_46 ABCat_47 ABCat_48 ABCat_49 ABCat_50 (tyrosine integrase) ABCat_51 ABCat_52 ABCat_53 (immunity repressor) ABCat_54 ABCat_55 ABCat_56 (pentapeptide repeat family protein) ABCat_57 ABCat_58 (DNA binding protein) ABCat_59 ABCat_60 ABCat_61 ABCat_62 ABCat_63 ABCat_64 (exonuclease) ABCat_65 ABCat_66 (ERF family ssDNA binding protein) ABCat_67 ABCat_68 ABCat_69 ABCat_70 ABCat_71 ABCat_72 ABCat_73 (DNA processing chain A) ABCat_74 (HNH endonuclease) ABCat_75 ABCat_76 ABCat_77 ABCat_78 (DnaB-like helicase) ABCat_79 ABCat_80 (WhiB family transcription factor) ABCat_81 ABCat_82 ABCat_83 (Holliday junction resolvase) ABCat_84 ABCat_85 (polynucleotide kinase) ABCat_86 ABCat_87 ABCat_88 (RNA ligase) ABCat_89 ABCat_90 (WhiB family transcription factor) ABCat_91 ABCat_92 ABCat_93 ABCat_94 ABCat_95 ABCat_96 (DNA methylase) ABCat_97 (ssDNA binding protein) ABCat_98 (ClpP-like protease) ABCat_99 ABCat_100 ABCat_101 ABCat_102 ABCat_103 (HNH endonuclease) ABCat_104 — tRNA (tRNA-Arg (cct)) ABCat_105 — tRNA (tRNA-Gly(tcc)) ABCat_106 ABCat_107 ABCat_108 ABCat_109 ABCat_110 ABCat_111 (DnaQ-like DNA polymerase III subunit) ABCat_112 ABCat_113 ABCat_114 ABCat_115 ABCat_116 (RecA-like DNA recombinase) ABCat_117 ABCat_118 ABCat_119 ABCat_120 ABCat_121 ABCat_122 ABCat_123 ABCat_124 ABCat_125 ABCat_126 ABCat_127 ABCat_128 (helix-turn-helix DNA binding domain protein) ABCat_129 ABCat_130 ABCat_131 ABCat_132 ABCat_133 ABCat_134 ABCat_135 ABCat_136 ABCat_137 ABCat_138 ABCat_139 ABCat_140 ABCat_141 ABCat_142 ABCat_143 ABCat_144 ABCat_145 (HNH endonuclease)
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KF188414
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
SEA Designator	2011SCSUabcatCFC
Pitt Freezer Box#	27
Pitt Freezer Box Grid#	43
Available Files
Plaque Picture	Download
EM Picture	Download

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