Mycobacterium phage Nimrod

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Detailed Information for Phage Nimrod
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByRichard McEwen
Year Found2015
Location FoundButte, MT USA
Finding InstitutionMontana Tech of the University of Montana
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesFather's garden at 115 E. Clark Street, Walkerville, MT
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 12, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1131
Genome length (bp)76435
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Sequencing NotesThe sequencing data show that about 85% of the phages in this population had a quite large deletion. The deletion is 4010 bp long, and goes from base 38690 to base 42699 (inclusive) in the final sequence. Thus, the final published sequence is only representative of 15% or so of the phages in the population that was sequenced, but we generally report the longer version so no genetic information is lost.

There was also some small level (~4%) of reads that were from a Cluster A1 contaminant.
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Nimrod_1

Nimrod_2

Nimrod_3

Nimrod_4

Nimrod_5

Nimrod_6
(terminase small subunit)

Nimrod_7

Nimrod_8
(terminase large subunit)

Nimrod_9

Nimrod_10
(portal protein)

Nimrod_11
(capsid maturation protease)

Nimrod_12
(major capsid protein)

Nimrod_13

Nimrod_14
(head-to-tail adaptor)

Nimrod_15
(head-to-tail stopper)

Nimrod_16

Nimrod_17
(tail terminator)

Nimrod_18
(major tail subunit)

Nimrod_19

Nimrod_20
(tail assembly chaperone)

Nimrod_21
(tail assembly chaperone)

Nimrod_22
(tape measure protein)

Nimrod_23
(minor tail protein)

Nimrod_24
(minor tail protein)

Nimrod_25

Nimrod_26
(minor tail protein)

Nimrod_27
(minor tail protein)

Nimrod_28

Nimrod_29

Nimrod_30

Nimrod_31

Nimrod_32
(lysin A)

Nimrod_33
(holin)

Nimrod_34

Nimrod_35
(lysin B)

Nimrod_36

Nimrod_37
(NrdH-like glutaredoxin)

Nimrod_38
(Lsr2-like DNA bridging protein)

Nimrod_39

Nimrod_40

Nimrod_41

Nimrod_42

Nimrod_43

Nimrod_44

Nimrod_45

Nimrod_46

Nimrod_47

Nimrod_48

Nimrod_49

Nimrod_50

Nimrod_51

Nimrod_52

Nimrod_53

Nimrod_54

Nimrod_55
(integrase)

Nimrod_56

Nimrod_57

Nimrod_58
(immunity repressor)

Nimrod_59

Nimrod_60
(pentapeptide repeat protein)

Nimrod_61

Nimrod_62

Nimrod_63

Nimrod_64

Nimrod_65

Nimrod_66

Nimrod_67

Nimrod_68
(exonuclease)

Nimrod_69

Nimrod_70
(ERF family ssDNA binding protein)

Nimrod_71

Nimrod_72

Nimrod_73

Nimrod_74

Nimrod_75

Nimrod_76

Nimrod_77
(DprA-like DNA processing chain A)

Nimrod_78
(HNH endonuclease)

Nimrod_79

Nimrod_80

Nimrod_81

Nimrod_82
(DnaB-like dsDNA helicase)

Nimrod_83

Nimrod_84
(WhiB family transcription factor)

Nimrod_85

Nimrod_86

Nimrod_87
(holliday junction resolvase)

Nimrod_88

Nimrod_89
(polynucleotide kinase)

Nimrod_90

Nimrod_91

Nimrod_92
(RNA ligase)

Nimrod_93
(HTH DNA binding domain protein)

Nimrod_94
(WhiB family transcription factor)

Nimrod_95

Nimrod_96

Nimrod_97

Nimrod_98

Nimrod_99
(HNH endonuclease)

Nimrod_100
(ssDNA binding protein)

Nimrod_101
(ClpP-like protease)

Nimrod_102

Nimrod_103

Nimrod_104

Nimrod_105

Nimrod_106
(HNH endonuclease)

Nimrod_109

Nimrod_110

Nimrod_111
(HNH endonuclease)

Nimrod_112

Nimrod_113

Nimrod_114
(DnaQ-like exonuclease)

Nimrod_115

Nimrod_116
(RecA-like recombinase)

Nimrod_117

Nimrod_118

Nimrod_119

Nimrod_120

Nimrod_121

Nimrod_122

Nimrod_123

Nimrod_124

Nimrod_125

Nimrod_126

Nimrod_127

Nimrod_128

Nimrod_129

Nimrod_130

Nimrod_131

Nimrod_132

Nimrod_133

Nimrod_134

Nimrod_135

Nimrod_136

Nimrod_137

Nimrod_138

Nimrod_139
(HNH endonuclease)

Nimrod_140

Nimrod_141

Nimrod_142

Nimrod_143

Nimrod_144

Nimrod_145

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK433262
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 22
Pitt Freezer Box Grid# D6
Available Files
GenBank File for PhameratorDownload