Mycobacterium phage Nimrod

BLAST and GeneMark available upon entering GPS coordinates

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Detailed Information for Phage Nimrod
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByRichard McEwen
Year Found2015
Location FoundButte, MT United States
Finding InstitutionMontana Tech of the University of Montana
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesFather's garden at 115 E. Clark Street, Walkerville, MT
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 12, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1131
Genome length (bp)76435
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Sequencing NotesThe sequencing data show that about 85% of the phages in this population had a quite large deletion. The deletion is 4010 bp long, and goes from base 38690 to base 42699 (inclusive) in the final sequence. Thus, the final published sequence is only representative of 15% or so of the phages in the population that was sequenced, but we generally report the longer version so no genetic information is lost.

There was also some small level (~4%) of reads that were from a Cluster A1 contaminant.
Fasta file available?Available upon entering GPS coordinates
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusAwaiting_QC
Has been Phamerated?Yes
Gene List
Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 22
Pitt Freezer Box Grid# D6