Mycobacterium phage Command613
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Detailed Information for Phage Command613
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByBrittany Horne, Alexis Whidbee
Year Found2016
Location FoundGreensboro, NC USA
Finding InstitutionNorth Carolina A&T State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates36.0774 N, 79.7723 W Map
Discovery NotesMoist soil from 1 day after rainfall.
Soil was acquired from 8 inches within the ground.
Naming NotesA popular television show named Scandal. B-613 is a secret spy division in the show and in order to be in control of the organization you must be appointed command. Thus, we composed the name COMMAND613.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 21, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage455
Genome length (bp)76025
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Command613_1

Command613_2

Command613_3

Command613_4

Command613_5

Command613_6
(terminase, small subunit)

Command613_7

Command613_8

Command613_9

Command613_10
(terminase, large subunit)

Command613_11

Command613_12
(portal protein)

Command613_13
(capsid maturation protease)

Command613_14
(major capsid protein)

Command613_15

Command613_16
(head-to-tail adaptor)

Command613_17
(head-to-tail stopper)

Command613_18

Command613_19
(tail terminator)

Command613_20
(major tail protein)

Command613_21
(tail assembly chaperone)

Command613_22
(tail assembly chaperone)

Command613_23
(tape measure protein)

Command613_24
(minor tail protein)

Command613_25
(minor tail protein)

Command613_26
(minor tail protein)

Command613_27
(minor tail protein)

Command613_28
(minor tail protein, D-ala-D-ala carboxypeptidase)

Command613_29

Command613_30

Command613_31
(helix-turn-helix DNA binding domain protein)

Command613_32
(membrane protein)

Command613_33
(lysin A)

Command613_34
(holin)

Command613_35

Command613_36
(lysin B)

Command613_37

Command613_38
(NrdH-like glutaredoxin)

Command613_39
(Lsr2-like DNA binding protein)

Command613_40

Command613_41

Command613_42

Command613_43

Command613_44

Command613_45

Command613_46

Command613_47

Command613_48

Command613_49

Command613_50

Command613_51

Command613_52

Command613_53
(membrane protein)

Command613_54
(tyrosine integrase)

Command613_55

Command613_56
(membrane protein)

Command613_57
(immunity repressor)

Command613_58

Command613_59
(membrane protein)

Command613_60
(pentapeptide repeat protein)

Command613_61

Command613_62

Command613_63

Command613_64

Command613_65

Command613_66

Command613_67

Command613_68

Command613_69
(exonuclease)

Command613_70

Command613_71
(ssDNA binding protein, ERF family)

Command613_72

Command613_73

Command613_74

Command613_75

Command613_76

Command613_77

Command613_78
(DprA-like DNA processing chain A)

Command613_79
(HNH endonuclease)

Command613_80

Command613_81

Command613_82

Command613_83
(DnaB-like dsDNA helicase)

Command613_84

Command613_85
(WhiB family transcription factor)

Command613_86

Command613_87

Command613_88
(Holliday junction resolvase)

Command613_89
(membrane protein)

Command613_90
(polynucleotide kinase)

Command613_91

Command613_92

Command613_93
(RNA ligase)

Command613_94
(helix-turn-helix DNA binding domain protein)

Command613_95
(WhiB family transcription factor)

Command613_96

Command613_97

Command613_98

Command613_99

Command613_100

Command613_101
(endoneuclease VII)

Command613_102
(ssDNA binding protein)

Command613_103
(ClpP-like protease)

Command613_104

Command613_105

Command613_106

Command613_107
(excise)

Command613_108
(HNH endonuclease)

Command613_111

Command613_112

Command613_113
(tRNA-Arg(cct))

Command613_114
(nucleotide pyrophosphohydrolase)

Command613_115

Command613_116
(DnaQ-like (DNA polymerase III subunit))

Command613_117

Command613_118
(RecA-like DNA recombinase)

Command613_119

Command613_120

Command613_121

Command613_122

Command613_123

Command613_124

Command613_125

Command613_126

Command613_127

Command613_128

Command613_129

Command613_130
(helix-turn-helix DNA binding domain protein)

Command613_131

Command613_132

Command613_133

Command613_134

Command613_135

Command613_136

Command613_137

Command613_138

Command613_139

Command613_140

Command613_141

Command613_142

Command613_143

Command613_144

Command613_145

Command613_146

Command613_147

Command613_148

Command613_149
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN586032
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 30
Pitt Freezer Box Grid# G6
Available Files
GenBank File for PhameratorDownload