Mycobacterium phage Stark
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Detailed Information for Phage Stark
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJohn Park
Year Found2012
Location FoundBaltimore, MD USA
Finding InstitutionJohns Hopkins University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.2986 N, 76.5946 W Map
Discovery NotesThe soil used was from a tomato plant patch. It was relatively wet. It also had various insects living in the patch.
Naming NotesThe name stark comes from one of my favorite tv series, the Game of Thrones.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 6, 2013
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage140
Sanger Finishing Reactions12
Genome length (bp)74731
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesRelatively small, Fuzzy on the outer areas of the plaque. about 1.5 mm diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Stark_1

Stark_2

Stark_3

Stark_4

Stark_5

Stark_6
(terminase small subunit)

Stark_7

Stark_8

Stark_9
(terminase large subunit)

Stark_10

Stark_11
(portal protein)

Stark_12
(capsid maturation protease)

Stark_13
(major capsid protein)

Stark_14

Stark_15
(head-to-tail adaptor)

Stark_16
(head-to-tail stopper)

Stark_17

Stark_18
(tail terminator)

Stark_19
(major tail protein)

Stark_20

Stark_21
(tail assembly chaperone)

Stark_22
(tail assembly chaperone)

Stark_23
(tapemeasure protein)

Stark_24
(minor tail protein)

Stark_25
(minor tail protein)

Stark_26
(minor tail protein)

Stark_27
(minor tail protein)

Stark_28
(minor tail protein)

Stark_29

Stark_30

Stark_31
(helix-turn-helix DNA binding domain protein)

Stark_32

Stark_33
(lysin A)

Stark_34
(holin)

Stark_35

Stark_36
(lysin B)

Stark_37

Stark_38
(NrdH-like glutaredoxin)

Stark_39
(Lsr2-like DNA bridging protein)

Stark_40

Stark_41

Stark_42

Stark_43

Stark_44

Stark_45

Stark_46

Stark_47

Stark_48

Stark_49

Stark_50

Stark_51

Stark_52

Stark_53
(tyrosine integrase)

Stark_54

Stark_55

Stark_56
(immunity repressor)

Stark_57

Stark_58

Stark_59
(pentapeptide repeat protein)

Stark_60

Stark_61

Stark_62

Stark_63

Stark_64

Stark_65

Stark_66

Stark_67

Stark_68
(exonuclease)

Stark_69

Stark_70
(ERF family ssDNA binding protein)

Stark_71

Stark_72

Stark_73

Stark_74

Stark_75

Stark_76

Stark_77
(DprA-like DNA processing chain A)

Stark_78
(HNH endonuclease)

Stark_79

Stark_80

Stark_81

Stark_82
(DnaB-like DNA helicase)

Stark_83

Stark_84
(WhiB family transcription factor)

Stark_85

Stark_86

Stark_87
(holliday junction resolvase)

Stark_88

Stark_89
(polynucleotide kinase)

Stark_90

Stark_91

Stark_92

Stark_93
(RNA ligase)

Stark_94
(helix-turn-helix DNA binding domain protein)

Stark_95
(WhiB family transcription factor)

Stark_96

Stark_97

Stark_98

Stark_99

Stark_100
(DNA methylase)

Stark_101
(ssDNA binding protein)

Stark_102
(ClpP-like protease)

Stark_103

Stark_104

Stark_105
(excise)

Stark_106
(HNH endonuclease)

Stark_109

Stark_110

Stark_111
(deoxycytidylate deaminase)

Stark_112

Stark_113
(DnaQ-like DNA polymerase III subunit)

Stark_114

Stark_115
(RecA-like DNA recombinase)

Stark_116

Stark_117

Stark_118

Stark_119

Stark_120

Stark_121

Stark_122

Stark_123

Stark_124

Stark_125

Stark_126
(helix-turn-helix DNA binding domain protein)

Stark_127

Stark_128

Stark_129

Stark_130

Stark_131

Stark_132

Stark_133

Stark_134

Stark_135

Stark_136

Stark_137

Stark_138

Stark_139

Stark_140

Stark_141

Stark_142

Stark_143
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN586019
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 13
Pitt Freezer Box Grid# C9
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload