Detailed Information for Phage Czyszczon1 |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Emilia Czyszczon |
Year Found | 2010 |
Location Found | Bedford, IN USA |
Finding Institution | Purdue University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 38.797861 N, 86.547 W Map |
Discovery Notes | Location: Bluespring Caverns in Bedford, Indiana Date: August 29, 2010 Air Temperature: 54°F (12.22°C) Water Temperature: 54°F (12.22°C) Soil Depth: 1 cm from top layer Soil Type: Glacial Mud Soil Moisture Content: Saturated Urban or Rural: Rural |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jun 13, 2013 |
Sequencing Facility | Purdue Genomics Facility |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 260 |
Genome length (bp) | 75075 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCTTGTCA |
GC Content | 62.9% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | E |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Purdue University |
Annotation Status | In GenBank |
Plaque Notes | Size: 0.5-1.5 mm radius Clear, round plaques with a thicker membrane surrounding |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MK359309 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
SEA Designator |
2010PURDczyszczon1EAC |
Pitt Freezer Box# |
16 |
Pitt Freezer Box Grid# |
11 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |