Mycobacterium phage Rimmer
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Rimmer
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAubriel Kepler & Christian Nakabayashi
Year Found2014
Location FoundOlympia, WA USA
Finding InstitutionThe Evergreen State College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates47.023056 N, 122.852778 W Map
Discovery NotesThis Phage was adopted on 10/31/2014.
Naming NotesRimmer, like many phages, is believed to have a large head. Seeing as you are what you eat, and this phage "feeds" on M.Smeg, it must be a "Smeg Head". Therefore this Phage has been named for the character Arnold Rimmer, a.k.a "Smeg Head", from the British Space Spoof Red Dwarf.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 16, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2261
Genome length (bp)75660
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThis phage results in plaques on a bacterial lawn of three distinct sizes: Small, Medium, and Large. Small is less than .5mm in diameter, medium is close to 1mm in diameter, and the large plaques are close to 2mm in diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Rimmer_1

Rimmer_2

Rimmer_3

Rimmer_4

Rimmer_5

Rimmer_6
(terminase small subunit)

Rimmer_7

Rimmer_8
(terminase large subunit)

Rimmer_9

Rimmer_10
(portal protein)

Rimmer_11
(capsid maturation protease)

Rimmer_12
(major capsid protein)

Rimmer_13

Rimmer_14
(head-to-tail adaptor)

Rimmer_15
(head-to-tail stopper)

Rimmer_16

Rimmer_17
(tail terminator)

Rimmer_18
(major tail protein)

Rimmer_19
(tail assembly chaperone)

Rimmer_20
(tail assembly chaperone)

Rimmer_21
(tapemeasure protein)

Rimmer_22
(minor tail protein)

Rimmer_23
(minor tail protein)

Rimmer_24
(minor tail protein)

Rimmer_25
(minor tail protein)

Rimmer_26
(minor tail protein)

Rimmer_27

Rimmer_28

Rimmer_29
(helix-turn-helix DNA binding domain protein)

Rimmer_30

Rimmer_31
(lysin A)

Rimmer_32
(holin)

Rimmer_33

Rimmer_34
(lysin B)

Rimmer_35

Rimmer_36
(NrdH-like glutaredoxin)

Rimmer_37
(Lsr2-like DNA bridging protein)

Rimmer_38

Rimmer_39

Rimmer_40

Rimmer_41

Rimmer_42

Rimmer_43

Rimmer_44

Rimmer_45

Rimmer_46

Rimmer_47

Rimmer_48

Rimmer_49

Rimmer_50

Rimmer_51

Rimmer_52

Rimmer_53
(tyrosine integrase)

Rimmer_54

Rimmer_55

Rimmer_56
(immunity repressor)

Rimmer_57

Rimmer_58

Rimmer_59
(pentapeptide repeat protein)

Rimmer_60

Rimmer_61

Rimmer_62

Rimmer_63

Rimmer_64

Rimmer_65

Rimmer_66

Rimmer_67

Rimmer_68
(exonuclease)

Rimmer_69

Rimmer_70
(ERF family ssDNA binding protein)

Rimmer_71

Rimmer_72

Rimmer_73

Rimmer_74

Rimmer_75

Rimmer_76

Rimmer_77
(DprA-like DNA processing chain A)

Rimmer_78
(HNH endonuclease)

Rimmer_79

Rimmer_80

Rimmer_81

Rimmer_82
(DnaB-like DNA helicase)

Rimmer_83

Rimmer_84
(WhiB family transcription factor)

Rimmer_85

Rimmer_86
(holliday junction resolvase)

Rimmer_87

Rimmer_88
(polynucleotide kinase)

Rimmer_89
(RNA ligase)

Rimmer_90
(helix-turn-helix DNA binding domain protein)

Rimmer_91
(WhiB family transcription factor)

Rimmer_92

Rimmer_93

Rimmer_94

Rimmer_95

Rimmer_96

Rimmer_97
(DNA methylase)

Rimmer_98
(ssDNA binding protein)

Rimmer_99
(ClpP-like protease)

Rimmer_100

Rimmer_101

Rimmer_102

Rimmer_103
(excise)

Rimmer_104
(HNH endonuclease)

Rimmer_107

Rimmer_108

Rimmer_109
(deoxycytidylate deaminase)

Rimmer_110

Rimmer_111
(DnaQ-like DNA polymerase III subunit)

Rimmer_112

Rimmer_113
(RecA-like DNA recombinase)

Rimmer_114

Rimmer_115

Rimmer_116

Rimmer_117

Rimmer_118

Rimmer_119

Rimmer_120

Rimmer_121

Rimmer_122

Rimmer_123

Rimmer_124

Rimmer_125
(helix-turn-helix DNA binding domain protein)

Rimmer_126

Rimmer_127

Rimmer_128

Rimmer_129

Rimmer_130

Rimmer_131

Rimmer_132

Rimmer_133

Rimmer_134

Rimmer_135

Rimmer_136

Rimmer_137

Rimmer_138

Rimmer_139

Rimmer_140

Rimmer_141

Rimmer_142

Rimmer_143

Rimmer_144

Rimmer_145
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN586044
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 15
Pitt Freezer Box Grid# F6
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload