The Actinobacteriophage Database

Mycobacterium phage Lilac

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Detailed Information for Phage Lilac
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Ana G. Suarez-Diaz
Year Found	2009
Location Found	Cayey, PR
Finding Institution	University of Puerto Rico at Cayey
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	18.123897 N, 66.156877 W Map
Discovery Notes	Soil isolated from under a tree from 2 centimeters deep. Temperature 90 degrees Centigrade.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jul 21, 2011
Sequencing Facility	Joint Genomics Institute
Shotgun Sequencing Method	Sanger Sequencing
Genome length (bp)	76260
Character of genome ends	3' Sticky Overhang
Overhang Length	9 bases
GC Content	63.0%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	E
Subcluster	--
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View 244 ABCat Adnama Amao AmericanBeauty Argent26 Asriel BaboJay BadStone Balomoji Barbarian Bask21 Bench BigBubba BilboSwaggins Bruin Buck BugsBunny Cactus ChosenOne ChotaBhai Cjw1 Command613 Contagion Cookies CrystalP Czyszczon1 Daikon DoctorDiddles DrDrey Dumbo Dusk Easy2Say Elite2014 Elph10 Emmina Eureka Filch FireRed Flypotenuse Gage Gator Gemini Glexan Goku GoldenSpark Goldilocks GooberAzure HanKaySha Harella Henry Highbury Holt Hoonter Hopey HufflyPuff Icee IHOP Inca JeTaime Kanye Kimchi Kostya Lilac Lilizi Lilpickle MadamMonkfish Manda Marshmallow Maxxinista Mindy Miniwave Misfit MISSy Moldemort Mosby MPhalcon Murica Murphy Myrale Nala NelitzaMV Nimrod NoSleep OrionPax Palpatine Paperbeatsrock Pat3 Petra64142 Phaja Pharsalus PhatBacter Phaux Phrux Policronamos Porky Pumpkin Quallification Rakim Rimmer RiverMonster Saints25 Sassay ShamWow ShereKhan Simpliphy SirDuracell SophKB Sotrice96 Stank Stark StellaBean StolenFromERC Tarkin TBrady12 TeardropMSU Teaspoon Terminus Thresher Tomaszewski Toto Traaww1 Tuco Ukulele Wiggin Willez Xandras xkcd YassJohnny Youngblood
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	Turbid plaques approximately 2 mm in diameter after 24 hour incubation at 37 degrees Centigrade.
Morphotype	Siphoviridae
Number of Genes	140
Number of tRNAs	2
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Lilac_1 Lilac_2 Lilac_3 Lilac_4 Lilac_5 Lilac_6 Lilac_7 (terminase small subunit) Lilac_8 Lilac_9 Lilac_10 (terminase large subunit) Lilac_11 Lilac_12 (portal protein) Lilac_13 (capsid maturation protease) Lilac_14 (major capsid protein) Lilac_15 Lilac_16 (head-to-tail adaptor) Lilac_17 (head-to-tail stopper) Lilac_18 Lilac_19 (tail terminator) Lilac_20 (major tail subunit) Lilac_21 Lilac_22 (tail assembly chaperone) Lilac_23 (tail assembly chaperone) Lilac_24 (tape measure protein) Lilac_25 (minor tail subunit) Lilac_26 (minor tail protein) Lilac_27 (minor tail subunit) Lilac_28 (minor tail subunit) Lilac_29 (D-Ala-D-Ala carboxypeptidase) Lilac_30 Lilac_31 Lilac_32 Lilac_33 Lilac_34 (lysin A) Lilac_35 (holin) Lilac_36 Lilac_37 (lysin B) Lilac_38 Lilac_39 (NrdH) Lilac_40 (Lsr2) Lilac_41 Lilac_42 Lilac_43 Lilac_44 Lilac_45 Lilac_46 Lilac_47 Lilac_48 Lilac_49 Lilac_50 Lilac_51 Lilac_52 Lilac_53 Lilac_54 Lilac_55 (tyrosine integrase) Lilac_56 Lilac_57 Lilac_58 Lilac_59 Lilac_60 (pentapeptide domain protein) Lilac_61 Lilac_62 Lilac_63 Lilac_64 Lilac_65 Lilac_66 Lilac_67 Lilac_68 Lilac_69 Lilac_70 Lilac_71 (ssDNA binding protein, ERF family) Lilac_72 Lilac_73 Lilac_74 Lilac_75 Lilac_76 Lilac_77 Lilac_78 Lilac_79 (HNH endonuclease domain protein) Lilac_80 Lilac_81 Lilac_82 Lilac_83 (DnaB-like helicase) Lilac_84 Lilac_85 (WhiB family transcription factor) Lilac_86 Lilac_87 Lilac_88 Lilac_89 Lilac_90 (polynucleotide kinase) Lilac_91 Lilac_92 Lilac_93 Lilac_94 (RNA ligase) Lilac_95 Lilac_96 (WhiB) Lilac_97 Lilac_98 Lilac_99 Lilac_100 Lilac_101 (DNA methyltransferase) Lilac_102 (ssDNA binding protein) Lilac_103 (ClpP-like protease) Lilac_104 Lilac_105 Lilac_106 Lilac_107 Lilac_108 — tRNA (gp108; tRNA-Arg (cct)) Lilac_109 — tRNA (gp109; tRNA-Gly (tcc)) Lilac_110 Lilac_111 Lilac_112 Lilac_113 Lilac_114 (DnaQ-like DNA polymerase III subunit) Lilac_115 Lilac_116 (RecA-like DNA recombinase) Lilac_117 Lilac_118 Lilac_119 Lilac_120 Lilac_121 Lilac_122 Lilac_123 Lilac_124 Lilac_125 Lilac_126 Lilac_127 (ParBc domain protein) Lilac_128 Lilac_129 Lilac_130 Lilac_131 Lilac_132 Lilac_133 Lilac_134 Lilac_135 Lilac_136 Lilac_137 Lilac_138 Lilac_139 Lilac_140 Lilac_141 Lilac_142
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	JN382248
Refseq Number	NC_023689
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
SEA Designator	2009UPRClilacASD
SEA Lysate Titer	2.0e8
Date of SEA Lysate Titering	Nov 9, 2009
Pitt Freezer Box#	2
Pitt Freezer Box Grid#	C7
Available Files
Plaque Picture	Download
Virtual Digest Picture	Download
EM Picture	Download
Final DNAMaster File	Download

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