Mycobacterium phage Lilac
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Detailed Information for Phage Lilac
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAna G. Suarez-Diaz
Year Found2009
Location FoundCayey, PR
Finding InstitutionUniversity of Puerto Rico at Cayey
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates18.123897 N, 66.156877 W Map
Discovery NotesSoil isolated from under a tree from 2 centimeters deep.
Temperature 90 degrees Centigrade.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 21, 2011
Sequencing FacilityJoint Genomics Institute
Shotgun Sequencing MethodSanger
Sequencer UsedSanger ABI 3730
Read TypePaired-end reads
Genome length (bp)76260
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesTurbid plaques approximately 2 mm in diameter after 24 hour incubation at 37 degrees Centigrade.
MorphotypeSiphoviridae
Number of Genes140
Number of tRNAs2
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Lilac_1

Lilac_2

Lilac_3

Lilac_4

Lilac_5

Lilac_6

Lilac_7
(terminase small subunit)

Lilac_8

Lilac_9

Lilac_10
(terminase large subunit)

Lilac_11

Lilac_12
(portal protein)

Lilac_13
(capsid maturation protease)

Lilac_14
(major capsid protein)

Lilac_15

Lilac_16
(head-to-tail adaptor)

Lilac_17
(head-to-tail stopper)

Lilac_18

Lilac_19
(tail terminator)

Lilac_20
(major tail subunit)

Lilac_21

Lilac_22
(tail assembly chaperone)

Lilac_23
(tail assembly chaperone)

Lilac_24
(tape measure protein)

Lilac_25
(minor tail subunit)

Lilac_26
(minor tail protein)

Lilac_27
(minor tail subunit)

Lilac_28
(minor tail subunit)

Lilac_29
(D-Ala-D-Ala carboxypeptidase)

Lilac_30

Lilac_31

Lilac_32

Lilac_33

Lilac_34
(lysin A)

Lilac_35
(holin)

Lilac_36

Lilac_37
(lysin B)

Lilac_38

Lilac_39
(NrdH)

Lilac_40
(Lsr2)

Lilac_41

Lilac_42

Lilac_43

Lilac_44

Lilac_45

Lilac_46

Lilac_47

Lilac_48

Lilac_49

Lilac_50

Lilac_51

Lilac_52

Lilac_53

Lilac_54

Lilac_55
(tyrosine integrase)

Lilac_56

Lilac_57

Lilac_58

Lilac_59

Lilac_60
(pentapeptide domain protein)

Lilac_61

Lilac_62

Lilac_63

Lilac_64

Lilac_65

Lilac_66

Lilac_67

Lilac_68

Lilac_69

Lilac_70

Lilac_71
(ssDNA binding protein, ERF family)

Lilac_72

Lilac_73

Lilac_74

Lilac_75

Lilac_76

Lilac_77

Lilac_78

Lilac_79
(HNH endonuclease domain protein)

Lilac_80

Lilac_81

Lilac_82

Lilac_83
(DnaB-like helicase)

Lilac_84

Lilac_85
(WhiB family transcription factor)

Lilac_86

Lilac_87

Lilac_88

Lilac_89

Lilac_90
(polynucleotide kinase)

Lilac_91

Lilac_92

Lilac_93

Lilac_94
(RNA ligase)

Lilac_95

Lilac_96
(WhiB)

Lilac_97

Lilac_98

Lilac_99

Lilac_100

Lilac_101
(DNA methyltransferase)

Lilac_102
(ssDNA binding protein)

Lilac_103
(ClpP-like protease)

Lilac_104

Lilac_105

Lilac_106

Lilac_107

Lilac_108 — tRNA
(gp108; tRNA-Arg (cct))

Lilac_109 — tRNA
(gp109; tRNA-Gly (tcc))

Lilac_110

Lilac_111

Lilac_112

Lilac_113

Lilac_114
(DnaQ-like DNA polymerase III subunit)

Lilac_115

Lilac_116
(RecA-like DNA recombinase)

Lilac_117

Lilac_118

Lilac_119

Lilac_120

Lilac_121

Lilac_122

Lilac_123

Lilac_124

Lilac_125

Lilac_126

Lilac_127
(ParBc domain protein)

Lilac_128

Lilac_129

Lilac_130

Lilac_131

Lilac_132

Lilac_133

Lilac_134

Lilac_135

Lilac_136

Lilac_137

Lilac_138

Lilac_139

Lilac_140

Lilac_141

Lilac_142

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN382248
Refseq NumberNC_023689
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2009UPRClilacASD
SEA Lysate Titer 2.0e8
Date of SEA Lysate Titering Nov 9, 2009
Pitt Freezer Box# 2
Pitt Freezer Box Grid# C7
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload