| Detailed Information for Phage Nimrod |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Richard McEwen |
| Year Found | 2015 |
| Location Found | Butte, MT USA |
| Finding Institution | Montana Technological University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 46.032050 N, 112.533600 W Map |
| Discovery Notes | Father's garden at 115 E. Clark Street, Walkerville, MT |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 12, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1131 |
| Genome length (bp) | 76435 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 9 bases |
| Overhang Sequence | CGCTTGTCA |
| GC Content | 62.9% |
| Sequencing Notes | The sequencing data show that about 85% of the phages in this population had a quite large deletion. The deletion is 4010 bp long, and goes from base 38690 to base 42699 (inclusive) in the final sequence. Thus, the final published sequence is only representative of 15% or so of the phages in the population that was sequenced, but we generally report the longer version so no genetic information is lost.
There was also some small level (~4%) of reads that were from a Cluster A1 contaminant. |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | E |
| Subcluster | -- |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Montana Technological University |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 143 |
| Number of tRNAs | 2 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK433262 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
22 |
| Pitt Freezer Box Grid# |
D6 |
| Available Files |
| GenBank File for Phamerator | Download |