Mycobacterium phage Phrux
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Detailed Information for Phage Phrux
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPatrick Campbell
Year Found2011
Location FoundOxford, OH USA
Finding InstitutionMiami University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.516305 N, 84.736070 W Map
Discovery NotesFound in soil under mulch beneath a tree.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 29, 2012
Approximate Shotgun Coverage340
Genome length (bp)74711
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesSmall, cloudy, lysogenic phages, all similar in size.
MorphotypeSiphoviridae
Number of Genes141
Number of tRNAs2
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Phrux_1

Phrux_2

Phrux_3

Phrux_4

Phrux_5
(terminase small subunit)

Phrux_6

Phrux_7

Phrux_8
(terminase large subunit)

Phrux_9

Phrux_10
(portal protein)

Phrux_11
(capsid maturation protease)

Phrux_12
(major capsid protein)

Phrux_13

Phrux_14
(head-to-tail adaptor)

Phrux_15
(head-to-tail stopper)

Phrux_16

Phrux_17
(tail terminator)

Phrux_18
(major tail subunit)

Phrux_19

Phrux_20
(tail assembly chaperone)

Phrux_21
(tail assembly chaperone)

Phrux_22
(tape measure protein)

Phrux_23
(minor tail protein)

Phrux_24
(minor tail protein)

Phrux_25
(minor tail protein)

Phrux_26
(minor tail protein)

Phrux_27
(D-Ala-D-Ala carboxypeptidase)

Phrux_28

Phrux_29

Phrux_30

Phrux_31

Phrux_32
(lysin A)

Phrux_33
(holin)

Phrux_34

Phrux_35
(lysin B)

Phrux_36

Phrux_37
(NrdH-like protein)

Phrux_38

Phrux_39
(Lsr2)

Phrux_40

Phrux_41

Phrux_42

Phrux_43

Phrux_44

Phrux_45

Phrux_46

Phrux_47

Phrux_48

Phrux_49

Phrux_50
(tyrosine integrase)

Phrux_51

Phrux_52

Phrux_53
(immunity repressor)

Phrux_54

Phrux_55

Phrux_56
(pentapeptide repeat family protein)

Phrux_57

Phrux_58

Phrux_59

Phrux_60

Phrux_61

Phrux_62

Phrux_63

Phrux_64

Phrux_65

Phrux_66
(ssDNA binding protein, ERF family)

Phrux_67

Phrux_68

Phrux_69

Phrux_70

Phrux_71

Phrux_72

Phrux_73

Phrux_74
(HNH endonuclease domain protein)

Phrux_75

Phrux_76

Phrux_77

Phrux_78
(DnaB-like helicase)

Phrux_79

Phrux_80
(WhiB family transcription factor)

Phrux_81

Phrux_82

Phrux_83

Phrux_84

Phrux_85
(polynucleotide kinase)

Phrux_86

Phrux_87

Phrux_88

Phrux_89
(RNA ligase)

Phrux_90

Phrux_91
(WhiB)

Phrux_92

Phrux_93

Phrux_94

Phrux_95

Phrux_96
(DNA methylase)

Phrux_97
(ssDNA binding protein)

Phrux_98
(ClpP-like protease)

Phrux_99

Phrux_100

Phrux_101

Phrux_102

Phrux_103 — tRNA
(tRNA arg(cct))

Phrux_104 — tRNA
(tRNA-gly(tcc))

Phrux_105

Phrux_106

Phrux_107

Phrux_108

Phrux_109
(DnaQ-like DNA polymerase III subunit)

Phrux_110
(RecA)

Phrux_111
(RecA-like DNA recombinase)

Phrux_112

Phrux_113

Phrux_114

Phrux_115

Phrux_116

Phrux_117

Phrux_118

Phrux_119

Phrux_120

Phrux_121

Phrux_122

Phrux_123

Phrux_124

Phrux_125

Phrux_126

Phrux_127

Phrux_128

Phrux_129

Phrux_130

Phrux_131

Phrux_132

Phrux_133

Phrux_134

Phrux_135

Phrux_136

Phrux_137

Phrux_138

Phrux_139

Phrux_140

Phrux_141

Phrux_142

Phrux_143
(HNH endonuclease domain protein)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKC661277
Refseq NumberNC_021309
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 26
Pitt Freezer Box Grid# 2
Available Files
Plaque PictureDownload