Mycobacterium phage SirDuracell
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Detailed Information for Phage SirDuracell
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPeter Nikolai
Year Found2008
Location FoundTriad, IL USA
Finding InstitutionTriad High School
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates38.711507 N, 89.773122 W Map
Discovery NotesCompost pile in St. Jacob, Illinois
Waste from rabbit hutch was added to the pile.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 11, 2011
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)75973
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes145
Number of tRNAs2
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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SirDuracell_1

SirDuracell_2

SirDuracell_3

SirDuracell_4

SirDuracell_5

SirDuracell_6
(terminase small subunit)

SirDuracell_7

SirDuracell_8
(terminase large subunit)

SirDuracell_9

SirDuracell_10
(portal protein)

SirDuracell_11
(capsid maturation protease)

SirDuracell_12
(major capsid protein)

SirDuracell_13

SirDuracell_14
(head-to-tail adaptor)

SirDuracell_15
(head-to-tail stopper)

SirDuracell_16

SirDuracell_17
(tail terminator)

SirDuracell_18
(major tail subunit)

SirDuracell_19
(tail assembly chaperone)

SirDuracell_20
(tail assembly chaperone)

SirDuracell_21
(tape measure protein)

SirDuracell_22

SirDuracell_23
(minor tail protein)

SirDuracell_24
(minor tail protein)

SirDuracell_25
(minor tail protein)

SirDuracell_26
(minor tail protein)

SirDuracell_27

SirDuracell_28

SirDuracell_29

SirDuracell_30

SirDuracell_31
(lysin A)

SirDuracell_32
(holin)

SirDuracell_33

SirDuracell_34
(lysin B)

SirDuracell_35
(NrdH)

SirDuracell_36

SirDuracell_37

SirDuracell_38
(Lsr2)

SirDuracell_39

SirDuracell_40

SirDuracell_41

SirDuracell_42

SirDuracell_43

SirDuracell_44

SirDuracell_45

SirDuracell_46

SirDuracell_47

SirDuracell_48

SirDuracell_49

SirDuracell_50

SirDuracell_51
(tyrosine integrase)

SirDuracell_52

SirDuracell_53

SirDuracell_54

SirDuracell_55

SirDuracell_56

SirDuracell_57

SirDuracell_58

SirDuracell_59

SirDuracell_60

SirDuracell_61

SirDuracell_62

SirDuracell_63

SirDuracell_64

SirDuracell_65

SirDuracell_66

SirDuracell_67

SirDuracell_68
(ssDNA binding protein, ERF family)

SirDuracell_69

SirDuracell_70

SirDuracell_71

SirDuracell_72

SirDuracell_73

SirDuracell_74

SirDuracell_75

SirDuracell_76

SirDuracell_77

SirDuracell_78

SirDuracell_79

SirDuracell_80
(DnaB-like helicase)

SirDuracell_81

SirDuracell_82
(WhiB family transcription factor)

SirDuracell_83

SirDuracell_84

SirDuracell_85

SirDuracell_86

SirDuracell_87

SirDuracell_88
(polynucleotide kinase)

SirDuracell_89

SirDuracell_90

SirDuracell_91
(RNA ligase)

SirDuracell_92

SirDuracell_93
(WhiB family transcription factor)

SirDuracell_94

SirDuracell_95

SirDuracell_96

SirDuracell_97

SirDuracell_98

SirDuracell_99
(methyltransferase)

SirDuracell_100
(single-stranded DNA-binding protein)

SirDuracell_101
(ClpP-like protease)

SirDuracell_102

SirDuracell_103

SirDuracell_104

SirDuracell_105

SirDuracell_106

SirDuracell_107 — tRNA
(tRNA-Arg (cct))

SirDuracell_108 — tRNA
(tRNA-Gly (tcc))

SirDuracell_109

SirDuracell_110

SirDuracell_111

SirDuracell_112

SirDuracell_113

SirDuracell_114
(DnaQ-like DNA polymerase III subunit)

SirDuracell_115

SirDuracell_116

SirDuracell_117

SirDuracell_118

SirDuracell_119
(RecA-like DNA recombinase)

SirDuracell_120

SirDuracell_121

SirDuracell_122

SirDuracell_123

SirDuracell_124

SirDuracell_125

SirDuracell_126

SirDuracell_127

SirDuracell_128

SirDuracell_129

SirDuracell_130

SirDuracell_131

SirDuracell_132
(ParB-like nuclease domain protein)

SirDuracell_133

SirDuracell_134

SirDuracell_135

SirDuracell_136

SirDuracell_137

SirDuracell_138

SirDuracell_139

SirDuracell_140

SirDuracell_141

SirDuracell_142

SirDuracell_143

SirDuracell_144

SirDuracell_145

SirDuracell_146

SirDuracell_147

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJF937106
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 3
Pitt Freezer Box Grid# A3
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload