Mycobacterium phage Stark
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Detailed Information for Phage Stark | |
Discovery Information | |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | John Park |
Year Found | 2012 |
Location Found | Baltimore, MD USA |
Finding Institution | Johns Hopkins University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | Not entered |
GPS Coordinates | 39.2986 N, 76.5946 W Map |
Discovery Notes | The soil used was from a tomato plant patch. It was relatively wet. It also had various insects living in the patch. |
Naming Notes | The name stark comes from one of my favorite tv series, the Game of Thrones. |
Sequencing Information | |
Sequencing Complete? | Yes |
Date Sequencing Completed | Feb 6, 2013 |
Sequencing Facility | Virginia Commonwealth University Nucleic Acids Research Facilities |
Shotgun Sequencing Method | 454 |
Approximate Shotgun Coverage | 140 |
Sanger Finishing Reactions | 12 |
Genome length (bp) | 74731 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCTTGTCA |
GC Content | 63.0% |
Fasta file available? | Yes: Download fasta file |
Characterization | |
Cluster | E |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members | |
Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Plaque Notes | Relatively small, Fuzzy on the outer areas of the plaque. about 1.5 mm diameter. |
Morphotype | Siphoviridae |
Number of Genes | 141 |
Number of tRNAs | 2 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List | |
Submitted Minimal DNA Master File | Download |
Publication Info | |
Uploaded to GenBank? | Yes |
GenBank Accession | MN586019 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info | |
Archiving status | Archived |
Pitt Freezer Box# | 13 |
Pitt Freezer Box Grid# | C9 |
Available Files | |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |