Detailed Information for Phage YassJohnny |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Former names | YasssJohnny |
Found By | Teams Phage and Chill & Trap Phages |
Year Found | 2015 |
Location Found | Los Angeles, CA USA |
Finding Institution | University of California, Los Angeles |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 35°C |
GPS Coordinates | 34.065618 N, 118.454008 W Map |
Discovery Notes | Soil collected by Johnny Pham. Phage isolated, purified and characterized by Teams Phage and Chill & Trap Phages.
Team Phage and Chill: Johnny Pham Sejal Mehta Judy Vo Veronica Gonzalez
Team: Trap Phages Emily Chiu Annika Taber Ruoxi Zhang Jennifer Briones
TA: Fasih Ahsan Instructor: Giorgia Pirino
Sample description: -Sample was taken near a root of plant in the garden of an apartment complex in an Urban area. Air temperature:87° F Depth from which sample was taken: 5 cm
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Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 6, 2016 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 913 |
Genome length (bp) | 73697 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 9 bases |
Overhang Sequence | CGCTTGTCA |
GC Content | 62.9% |
Sequencing Notes | There is a polymorphism in this genome. At position 28117, about 45% of the reads have a T instead of the currently called consensus C. |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | E |
Subcluster | -- |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes |
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Morphotype | Siphoviridae |
Number of Genes | 139 |
Number of tRNAs | 2 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MF919541 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
23 |
Pitt Freezer Box Grid# |
E10 |
Available Files |
GenBank File for Phamerator | Download |