Mycobacterium phage Zaria
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Detailed Information for Phage Zaria
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPhilleon Chambers
Year Found2016
Location FoundAtlanta, GA USA
Finding InstitutionMorehouse College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates33.746647 N, 84.413939 W Map
Discovery NotesPCR Primer cluster assignment: B5
Naming NotesName after one of Africa's well known Queens
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage1668
Genome length (bp)74365
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGAACGGCC
GC Content58.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterL
SubclusterL1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesClear, size ranged from 1 mm-2 miller-meters, edge of phage vary in clearness as in visibility of a define edges from lightly fade to clean cut
MorphotypeSiphoviridae
Number of Genes128
Number of tRNAs9
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Zaria_1

Zaria_2
(terminase small subunit)

Zaria_3

Zaria_4
(terminase large subunit)

Zaria_5
(portal protein)

Zaria_6
(MuF-like minor capsid protein)

Zaria_7
(scaffolding protein)

Zaria_8
(major capsid protein)

Zaria_9
(head-to-tail adaptor)

Zaria_10
(head-to-tail stopper)

Zaria_11

Zaria_12
(tail terminator)

Zaria_13
(major tail protein)

Zaria_14
(tail assembly chaperone)

Zaria_15
(tail assembly chaperone)

Zaria_16
(tape measure protein)

Zaria_17
(minor tail protein)

Zaria_18
(minor tail protein)

Zaria_19

Zaria_20
(minor tail protein)

Zaria_21
(minor tail protein)

Zaria_22

Zaria_23

Zaria_24

Zaria_25
(lysin A)

Zaria_26
(lysin B)

Zaria_27

Zaria_28

Zaria_29

Zaria_30
(NrdH-like glutaredoxin)

Zaria_31

Zaria_32
(nucleotidyltransferase)

Zaria_33
(Lsr2-like DNA bridging protein)

Zaria_34

Zaria_35

Zaria_36
(tyrosine integrase)

Zaria_37

Zaria_38
(immunity repressor)

Zaria_39
(Cro protein)

Zaria_40
(excise)

Zaria_41

Zaria_42

Zaria_43

Zaria_44

Zaria_45

Zaria_46
(esterase)

Zaria_47

Zaria_48

Zaria_49

Zaria_50

Zaria_51

Zaria_52

Zaria_53

Zaria_54
(Ro-like RNA binding protein)

Zaria_55

Zaria_56

Zaria_57

Zaria_58

Zaria_59

Zaria_60
(Cas4 family exonuclease)

Zaria_61
(LamD-like protein)

Zaria_62
(ERF family ssDNA binding protein)

Zaria_63

Zaria_64

Zaria_65

Zaria_66

Zaria_67

Zaria_68

Zaria_69
(DnaB-like dsDNA helicase)

Zaria_70
(WhiB family transcription factor)

Zaria_71

Zaria_72

Zaria_73
(phosphoribosyl pyrophosphate transferase)

Zaria_74
(nicotinate ribosyltransferase)

Zaria_75

Zaria_76
(polynucleotide kinase)

Zaria_77

Zaria_78
(RusA-like resolvase)

Zaria_79
(WhiB family transcription factor)

Zaria_80
(WhiB family transcription factor)

Zaria_81

Zaria_82

Zaria_83
(ssDNA binding protein)

Zaria_84

Zaria_85

Zaria_86
(RNA ligase)

Zaria_87

Zaria_88

Zaria_89

Zaria_90

Zaria_91
(HNH endonuclease)

Zaria_92

Zaria_93

Zaria_94
(DnaQ-like DNA polymerase III subunit)

Zaria_95

Zaria_96

Zaria_97

Zaria_98

Zaria_99
(HNH endonuclease)

Zaria_100

Zaria_101

Zaria_102

Zaria_103

Zaria_104

Zaria_105 — tRNA
(tRNA-Leu(caa))

Zaria_106 — tRNA
(tRNA-Thr(cgt))

Zaria_107

Zaria_108 — tRNA
(tRNA-Pro(tgg))

Zaria_109 — tRNA
(tRNA-Trp(cca))

Zaria_110

Zaria_111 — tRNA
(tRNA-His(gtg))

Zaria_112 — tRNA
(tRNA-Gln(ctg))

Zaria_113 — tRNA
(tRNA-Lys(ctt))

Zaria_114

Zaria_115

Zaria_116

Zaria_117

Zaria_118 — tRNA
(tRNA-Asn(gtt))

Zaria_119 — tRNA
(tRNA-Lys(ttt))

Zaria_120

Zaria_121

Zaria_122

Zaria_123

Zaria_124

Zaria_125

Zaria_126

Zaria_127

Zaria_128

Zaria_129

Zaria_130

Zaria_131

Zaria_132

Zaria_133
(AAA-ATPase)

Zaria_134

Zaria_135

Zaria_136

Zaria_137

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN586023
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 40
Pitt Freezer Box Grid# A5
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload