Mycobacterium phage Daisy
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Liberone (GI) Neuvillette (FR) FatCactus (A20) Rossetti (L2) RoseMarie (None)Mycobacterium phage Daisy
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| Detailed Information for Phage Daisy | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Lena Lupey |
| Year Found | 2009 |
| Location Found | Philadelphia, PA USA |
| Finding Institution | Saint Joseph's University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 39.9940 N, 75.2382 W Map |
| Discovery Notes | The soil was collected a flowerbed beside a concrete walkway between the Francis A. Drexel Library and Science Center on SJU campus. The sample was taken 4 cm below the surface and was dry. The temperature at the time of collection was 71? C. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 17, 2011 |
| Sequencing Facility | Joint Genomics Institute |
| Genome length (bp) | 68245 |
| Character of genome ends | Circularly Permuted |
| GC Content | 67.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | B |
| Subcluster | B3 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members | |
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques were clear. The average size of the plaques was 1-2 mm in diameter. The plaques appeared after 48 hours of incubation. |
| Morphotype | Siphoviridae |
| Number of Genes | 102 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List | |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JF704095 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 1 |
| Pitt Freezer Box Grid# | E12 |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| Virtual Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
