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Mycobacterium phage MRabcd
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Detailed Information for Phage MRabcd
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAlana Deutsch and Bryan Ciccarello
Year Found2011
Location FoundSt. Louis , MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.63 N, 90.29 W Map
Discovery NotesFound in the St. Louis Zoo near the rhino exhibit. 1.5 cm below ground level next to a cement path with heavy foot trafic. The general area is shaded by trees and shrubs.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedOct 10, 2013
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage248
Genome length (bp)68791
Character of genome endsCircularly Permuted
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterB
SubclusterB1
Cluster Life CycleLytic
Other Cluster Members

Click to View

BirdsNest (None)

Indlovu (None)

LilMcDreamy (None)

Quesadilla (None)

AbsoluteMadLad (B1)

ABU (B1)

AltPhacts (B1)

Altwerkus (B1)

Antonia (B1)

Apizium (B1)

Ashraf (B1)

Badfish (B1)

Banjo (B1)

BatteryCK (B1)

Beaglebox (B1)

Bishoperium (B1)

BlackStallion (B1)

Buckeye (B1)

CamL (B1)

Cannibal (B1)

Carthage (B1)

Chah (B1)

CharlieGBrown (B1)

CheetO (B1)

Childish (B1)

Chorkpop (B1)

Chunky (B1)

Cobra (B1)

Colbert (B1)

Cosmolli16 (B1)

Craff (B1)

Crownjwl (B1)

Daffy (B1)

Derpp (B1)

Dingo (B1)

Dione (B1)

Doddsville (B1)

DoesntMatter (B1)

DonSanchon (B1)

DuchessDung (B1)

Duggie (B1)

Durga (B1)

Emiris (B1)

EmpTee (B1)

Eremos (B1)

Eugenia (B1)

Fang (B1)

FluffyNinja (B1)

FriarPreacher (B1)

Fringe (B1)

FugateOSU (B1)

Gareth (B1)

GeneCoco (B1)

Gophee (B1)

Grand2040 (B1)

Gyarad (B1)

Haimas (B1)

Haleema (B1)

Hamish (B1)

Harvey (B1)

Held (B1)

HenryJackson (B1)

Hertubise (B1)

Hetaeria (B1)

HighStump (B1)

Hocus (B1)

Horchata (B1)

HSavage (B1)

ImtiyazSitla (B1)

Iridoclysis (B1)

IsaacEli (B1)

JacAttac (B1)

JakeO (B1)

JangoPhett (B1)

Jillium (B1)

Jiminy (B1)

Kahve (B1)

Kailash (B1)

Keitherie (B1)

Kikipoo (B1)

KingTut (B1)

KingVeVeVe (B1)

KlimbOn (B1)

Kloppinator (B1)

KLucky39 (B1)

Kwadwo (B1)

Kwksand96 (B1)

Labeouficaum (B1)

Lasso (B1)

LeeLot (B1)

Lego3393 (B1)

Legolas (B1)

LemonSlice (B1)

Longacauda (B1)

LuckyMarjie (B1)

Lulumae (B1)

Mag7 (B1)

Mana (B1)

Manad (B1)

Maskar (B1)

Matalotodo (B1)

Mcshane (B1)

Mecca (B1)

Megatron (B1)

Mesh1 (B1)

MichaelPhcott (B1)

Mikota (B1)

MitKao (B1)

Morgushi (B1)

Morty (B1)

Mosaic (B1)

MRabcd (B1)

Mulan (B1)

Murdoc (B1)

Mutante (B1)

Nacho (B1)

Newman (B1)

Numberten (B1)

Oline (B1)

Olive (B1)

OliverWalter (B1)

Omniscient (B1)

Oosterbaan (B1)

Orion (B1)

OSmaximus (B1)

PG1 (B1)

Phamished (B1)

Phareon (B1)

PhatCats2014 (B1)

PhenghisKhan (B1)

Phergie (B1)

Phipps (B1)

Phleuron (B1)

PhrankReynolds (B1)

PhrodoBaggins (B1)

Phunky (B1)

Piglet (B1)

PinheadLarry (B1)

Pinkman (B1)

Pipsqueak (B1)

Placalicious (B1)

Plmatters (B1)

Podrick (B1)

Pops (B1)

Potter (B1)

Prickles (B1)

ProfessorX (B1)

Puhltonio (B1)

QueenBeane (B1)

RedMaple (B1)

Riggan (B1)

Robyn (B1)

Roliet (B1)

Roscoe (B1)

Roy17 (B1)

Samaymay (B1)

SassyCat97 (B1)

Schadenfreude (B1)

Scoot17C (B1)

SDcharge11 (B1)

Serendipity (B1)

Serpentine (B1)

Sheila (B1)

ShiVal (B1)

Sigman (B1)

Skippy (B1)

Solosis (B1)

Sophia (B1)

Soto (B1)

Spartan300 (B1)

Squid (B1)

Squiggle (B1)

Struggle (B1)

Suffolk (B1)

Surely (B1)

Swish (B1)

TallGrassMM (B1)

Thora (B1)

ThreeOh3D2 (B1)

Timmi (B1)

TomBombadil (B1)

Trypo (B1)

TyrionL (B1)

UAch1 (B1)

UncleHowie (B1)

Vaishali24 (B1)

Valjean (B1)

Vaticameos (B1)

Veritas (B1)

Virapocalypse (B1)

Vista (B1)

Vivaldi (B1)

Vortex (B1)

Wallhey (B1)

Waterdiva (B1)

Xavier (B1)

Yoshand (B1)

YouGoGlencoco (B1)

Zaider (B1)

Zelda (B1)

Zonia (B1)

Arbiter (B2)

Ares (B2)

Bananafish (B2)

Boyle (B2)

Brownie5 (B2)

Coffee (B2)

Eaglehorse (B2)

Faze9 (B2)

FrenchFry (B2)

Glass (B2)

Godines (B2)

Hedgerow (B2)

Holeinone (B2)

ItsyBitsy1 (B2)

Kheth (B2)

Laurie (B2)

Lephleur (B2)

LizLemon (B2)

Opia (B2)

Qyrzula (B2)

Rhinoforte (B2)

Rosebush (B2)

Sabella (B2)

TA17a (B2)

Tinciduntsolum (B2)

Tres (B2)

West99 (B2)

Abinghost (B3)

Akoma (B3)

Athena (B3)

Audrey (B3)

Baloo (B3)

Bernardo (B3)

ChaChing (B3)

Chandler (B3)

Compostia (B3)

Corofin (B3)

Daisy (B3)

Gadjet (B3)

Heathcliff (B3)

Jackstina (B3)

Kamiyu (B3)

Marley1013 (B3)

Mortcellus (B3)

Morty007 (B3)

Nozo (B3)

Obutu (B3)

OrangeOswald (B3)

Phaedrus (B3)

Philly (B3)

Phlyer (B3)

Pipefish (B3)

RagingRooster (B3)

Rita1961 (B3)

RomaT (B3)

SynergyX (B3)

Tydolla (B3)

Yahalom (B3)

AlanGrant (B4)

Apex (B4)

BrownCNA (B4)

ChrisnMich (B4)

Cooper (B4)

Fortunato (B4)

Frederick (B4)

Hangman (B4)

JAMaL (B4)

Lolalove (B4)

Magpie (B4)

Mithril (B4)

Nigel (B4)

RawrgerThat (B4)

Stinger (B4)

Vincenzo (B4)

Waleliano (B4)

Zemanar (B4)

Acadian (B5)

Baee (B5)

Donny (B5)

Phelemich (B5)

Reprobate (B5)

Rich (B5)

Serendipitous (B5)

39HC (B6)

40BC (B6)

Hosp (B6)

Jolie1 (B6)

KayaCho (B6)

Saguaro (B7)

Thonko (B8)

Imvubu (B9)

Annotating InstitutionHoward Hughes Medical Institute
Annotation StatusIn GenBank
Plaque Notesplaques-small (1mm diameter), clear
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

MRabcd_1
(adenylate kinase)

MRabcd_2
(terminase)

MRabcd_3

MRabcd_4

MRabcd_5

MRabcd_6
(RuvC-like resolvase)

MRabcd_7
(membrane protein)

MRabcd_8
(portal protein)

MRabcd_9
(capsid maturation protease and MuF-like fusion protein)

MRabcd_10

MRabcd_11
(major capsid protein)

MRabcd_12

MRabcd_13

MRabcd_14
(membrane protein)

MRabcd_15
(membrane protein)

MRabcd_16
(membrane protein)

MRabcd_17
(major tail protein)

MRabcd_18

MRabcd_19
(queuine tRNA-ribosyltransferase)

MRabcd_20

MRabcd_21
(head-to-tail adaptor)

MRabcd_22

MRabcd_23

MRabcd_24
(tail assembly chaperone)

MRabcd_25

MRabcd_26

MRabcd_27
(tape measure protein)

MRabcd_28
(minor tail protein)

MRabcd_29
(minor tail protein)

MRabcd_30
(minor tail protein)

MRabcd_31
(minor tail protein)

MRabcd_32
(minor tail protein)

MRabcd_33

MRabcd_34

MRabcd_35

MRabcd_36

MRabcd_37

MRabcd_38

MRabcd_39

MRabcd_40

MRabcd_41

MRabcd_42

MRabcd_43
(membrane protein)

MRabcd_44
(helix-turn-helix DNA binding domain protein)

MRabcd_45
(helix-turn-helix DNA binding domain protein)

MRabcd_46

MRabcd_47
(lysin A)

MRabcd_48
(lysin B)

MRabcd_49

MRabcd_50

MRabcd_51
(DNA helicase)

MRabcd_52

MRabcd_53

MRabcd_54

MRabcd_55

MRabcd_56

MRabcd_57
(DNA primase/polymerase)

MRabcd_58

MRabcd_59

MRabcd_60
(DNA polymerase I)

MRabcd_61

MRabcd_62

MRabcd_63

MRabcd_64

MRabcd_65

MRabcd_66

MRabcd_67

MRabcd_68

MRabcd_69

MRabcd_70
(helix-turn-helix DNA binding domain protein)

MRabcd_71

MRabcd_72

MRabcd_73

MRabcd_74

MRabcd_75
(HNH endonuclease)

MRabcd_76

MRabcd_77

MRabcd_78

MRabcd_79

MRabcd_80

MRabcd_81

MRabcd_82

MRabcd_83

MRabcd_84
(HNH endonuclease)

MRabcd_85

MRabcd_86

MRabcd_87

MRabcd_88

MRabcd_89

MRabcd_90

MRabcd_91

MRabcd_92

MRabcd_93

MRabcd_94

MRabcd_95

MRabcd_96

MRabcd_97

MRabcd_98
(membrane protein)

MRabcd_99

MRabcd_100

MRabcd_101

MRabcd_102

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK279866
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011WUSLmrabcdKH
SEA Lysate Titer 3.8e9
Date of SEA Lysate Titering Oct 4, 2011
Pitt Freezer Box# 31
Pitt Freezer Box Grid# 20
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload