Mycobacterium phage RomaT
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Detailed Information for Phage RomaT
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByLauren Carter
Year Found2016
Location FoundMountain Top, PA USA
Finding InstitutionUniversity of the Sciences in Philadelphia
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates41.164077 N, 75.86752 W Map
Discovery NotesThis soul sample was collected in an urban region, in my backyard garden, and in an area of light foot traffic. The ground is flat and it is in an enclosed region far from roads and water but close to trees.
Naming NotesI chose the name "RomaT" because I found the soil sample in my tomato garden and Roma is a type of tomato!
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 16, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage76
Genome length (bp)69239
Character of genome endsCircularly Permuted
GC Content67.5%
Sequencing NotesThis genome was sequenced as part of a DOGEMS sample.
Fasta file available?Yes: Download fasta file
Characterization
ClusterB
SubclusterB3
Cluster Life CycleLytic
Other Cluster Members

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BirdsNest (None)

Indlovu (None)

LilMcDreamy (None)

Quesadilla (None)

AbsoluteMadLad (B1)

ABU (B1)

AltPhacts (B1)

Altwerkus (B1)

Antonia (B1)

Apizium (B1)

Ashraf (B1)

Badfish (B1)

Banjo (B1)

BatteryCK (B1)

Beaglebox (B1)

Bishoperium (B1)

BlackStallion (B1)

Buckeye (B1)

CamL (B1)

Cannibal (B1)

Carthage (B1)

Chah (B1)

CharlieGBrown (B1)

CheetO (B1)

Childish (B1)

Chorkpop (B1)

Chunky (B1)

Cobra (B1)

Colbert (B1)

Cosmolli16 (B1)

Craff (B1)

Crownjwl (B1)

Daffy (B1)

Derpp (B1)

Dingo (B1)

Dione (B1)

Doddsville (B1)

DoesntMatter (B1)

DonSanchon (B1)

DuchessDung (B1)

Duggie (B1)

Durga (B1)

Emiris (B1)

EmpTee (B1)

Eremos (B1)

Eugenia (B1)

Fang (B1)

FluffyNinja (B1)

FriarPreacher (B1)

Fringe (B1)

FugateOSU (B1)

Gareth (B1)

GeneCoco (B1)

Gophee (B1)

Grand2040 (B1)

Gyarad (B1)

Haimas (B1)

Haleema (B1)

Hamish (B1)

Harvey (B1)

Held (B1)

HenryJackson (B1)

Hertubise (B1)

Hetaeria (B1)

HighStump (B1)

Hocus (B1)

Horchata (B1)

HSavage (B1)

ImtiyazSitla (B1)

Iridoclysis (B1)

IsaacEli (B1)

JacAttac (B1)

JakeO (B1)

JangoPhett (B1)

Jillium (B1)

Jiminy (B1)

Kahve (B1)

Kailash (B1)

Keitherie (B1)

Kikipoo (B1)

KingTut (B1)

KingVeVeVe (B1)

KlimbOn (B1)

Kloppinator (B1)

KLucky39 (B1)

Kwadwo (B1)

Kwksand96 (B1)

Labeouficaum (B1)

Lasso (B1)

LeeLot (B1)

Lego3393 (B1)

Legolas (B1)

LemonSlice (B1)

Longacauda (B1)

LuckyMarjie (B1)

Lulumae (B1)

Mag7 (B1)

Mana (B1)

Manad (B1)

Maskar (B1)

Matalotodo (B1)

Mcshane (B1)

Mecca (B1)

Megatron (B1)

Mesh1 (B1)

MichaelPhcott (B1)

Mikota (B1)

MitKao (B1)

Morgushi (B1)

Morty (B1)

Mosaic (B1)

MRabcd (B1)

Mulan (B1)

Murdoc (B1)

Mutante (B1)

Nacho (B1)

Newman (B1)

Numberten (B1)

Oline (B1)

Olive (B1)

OliverWalter (B1)

Omniscient (B1)

Oosterbaan (B1)

Orion (B1)

OSmaximus (B1)

PG1 (B1)

Phamished (B1)

Phareon (B1)

PhatCats2014 (B1)

PhenghisKhan (B1)

Phergie (B1)

Phipps (B1)

Phleuron (B1)

PhrankReynolds (B1)

PhrodoBaggins (B1)

Phunky (B1)

Piglet (B1)

PinheadLarry (B1)

Pinkman (B1)

Pipsqueak (B1)

Placalicious (B1)

Plmatters (B1)

Podrick (B1)

Pops (B1)

Potter (B1)

Prickles (B1)

ProfessorX (B1)

Puhltonio (B1)

QueenBeane (B1)

RedMaple (B1)

Riggan (B1)

Robyn (B1)

Roliet (B1)

Roscoe (B1)

Roy17 (B1)

Samaymay (B1)

SassyCat97 (B1)

Schadenfreude (B1)

Scoot17C (B1)

SDcharge11 (B1)

Serendipity (B1)

Serpentine (B1)

Sheila (B1)

ShiVal (B1)

Sigman (B1)

Skippy (B1)

Solosis (B1)

Sophia (B1)

Soto (B1)

Spartan300 (B1)

Squid (B1)

Squiggle (B1)

Struggle (B1)

Suffolk (B1)

Surely (B1)

Swish (B1)

TallGrassMM (B1)

Thora (B1)

ThreeOh3D2 (B1)

Timmi (B1)

TomBombadil (B1)

Trypo (B1)

TyrionL (B1)

UAch1 (B1)

UncleHowie (B1)

Vaishali24 (B1)

Valjean (B1)

Vaticameos (B1)

Veritas (B1)

Virapocalypse (B1)

Vista (B1)

Vivaldi (B1)

Vortex (B1)

Wallhey (B1)

Waterdiva (B1)

Xavier (B1)

Yoshand (B1)

YouGoGlencoco (B1)

Zaider (B1)

Zelda (B1)

Zonia (B1)

Arbiter (B2)

Ares (B2)

Bananafish (B2)

Boyle (B2)

Brownie5 (B2)

Coffee (B2)

Eaglehorse (B2)

Faze9 (B2)

FrenchFry (B2)

Glass (B2)

Godines (B2)

Hedgerow (B2)

Holeinone (B2)

ItsyBitsy1 (B2)

Kheth (B2)

Laurie (B2)

Lephleur (B2)

LizLemon (B2)

Opia (B2)

Qyrzula (B2)

Rhinoforte (B2)

Rosebush (B2)

Sabella (B2)

TA17a (B2)

Tinciduntsolum (B2)

Tres (B2)

West99 (B2)

Abinghost (B3)

Akoma (B3)

Athena (B3)

Audrey (B3)

Baloo (B3)

Bernardo (B3)

ChaChing (B3)

Chandler (B3)

Compostia (B3)

Corofin (B3)

Daisy (B3)

Gadjet (B3)

Heathcliff (B3)

Jackstina (B3)

Kamiyu (B3)

Marley1013 (B3)

Mortcellus (B3)

Morty007 (B3)

Nozo (B3)

Obutu (B3)

OrangeOswald (B3)

Phaedrus (B3)

Philly (B3)

Phlyer (B3)

Pipefish (B3)

RagingRooster (B3)

Rita1961 (B3)

RomaT (B3)

SynergyX (B3)

Tydolla (B3)

Yahalom (B3)

AlanGrant (B4)

Apex (B4)

BrownCNA (B4)

ChrisnMich (B4)

Cooper (B4)

Fortunato (B4)

Frederick (B4)

Hangman (B4)

JAMaL (B4)

Lolalove (B4)

Magpie (B4)

Mithril (B4)

Nigel (B4)

RawrgerThat (B4)

Stinger (B4)

Vincenzo (B4)

Waleliano (B4)

Zemanar (B4)

Acadian (B5)

Baee (B5)

Donny (B5)

Phelemich (B5)

Reprobate (B5)

Rich (B5)

Serendipitous (B5)

39HC (B6)

40BC (B6)

Hosp (B6)

Jolie1 (B6)

KayaCho (B6)

Saguaro (B7)

Thonko (B8)

Imvubu (B9)

Annotating InstitutionUniversity of the Sciences in Philadelphia
Annotation StatusIn GenBank
Plaque NotesRoma-T has a capsid that measures 60 nanometers and a tail that measures 270 nanometers. This phage is also very temperate and produces plaque sizes of about 1 millimeter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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RomaT_1
(ParB-like nuclease domain protein)

RomaT_2

RomaT_3

RomaT_4
(PAPS reductase-like domain protein)

RomaT_5
(ParB-like nuclease domain protein)

RomaT_6
(terminase)

RomaT_7

RomaT_8
(RuvC-like resolvase)

RomaT_9

RomaT_10
(membrane protein)

RomaT_11
(portal protein)

RomaT_12
(capsid maturation protease and MuF-like fusion protein)

RomaT_13

RomaT_14
(major capsid protein)

RomaT_15

RomaT_16

RomaT_17
(membrane protein)

RomaT_18
(membrane protein)

RomaT_19
(membrane protein)

RomaT_20

RomaT_21
(major tail protein)

RomaT_22

RomaT_23
(head-to-tail adaptor)

RomaT_24

RomaT_25

RomaT_26
(tail assembly chaperone)

RomaT_27

RomaT_28
(tape measure protein)

RomaT_29
(minor tail protein)

RomaT_30
(minor tail protein)

RomaT_31
(minor tail protein)

RomaT_32
(minor tail protein)

RomaT_33
(minor tail protein)

RomaT_34

RomaT_35

RomaT_36

RomaT_37

RomaT_38

RomaT_39

RomaT_40

RomaT_41

RomaT_42

RomaT_43
(helix-turn-helix DNA binding domain protein)

RomaT_44
(helix-turn-helix DNA binding domain protein)

RomaT_45

RomaT_46
(lysin A)

RomaT_47
(lysin B)

RomaT_48

RomaT_49

RomaT_50

RomaT_51

RomaT_52
(helicase)

RomaT_53

RomaT_54

RomaT_55

RomaT_56
(DNA primase/polymerase)

RomaT_57

RomaT_58
(DNA polymerase I)

RomaT_59

RomaT_60

RomaT_61

RomaT_62

RomaT_63

RomaT_64

RomaT_65

RomaT_66

RomaT_67

RomaT_68
(ribbon-helix-helix DNA binding domain protein)

RomaT_69

RomaT_70

RomaT_71
(helix-turn-helix DNA binding domain protein)

RomaT_72

RomaT_73

RomaT_74

RomaT_75

RomaT_76

RomaT_77

RomaT_78

RomaT_79

RomaT_80
(HNH endonuclease)

RomaT_81

RomaT_82

RomaT_83

RomaT_84

RomaT_85

RomaT_86

RomaT_87

RomaT_88

RomaT_89
(HicA-like toxin)

RomaT_90

RomaT_91

RomaT_92

RomaT_93

RomaT_94

RomaT_95

RomaT_96

RomaT_97

RomaT_98

RomaT_99

RomaT_100

RomaT_101

RomaT_102

RomaT_103

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK359357
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 34
Pitt Freezer Box Grid# F7
Available Files
GenBank File for PhameratorDownload