Detailed Information for Phage Badfish |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Matthew Olm |
Year Found | 2011 |
Location Found | Pittsburgh, PA USA |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | No |
Isolation Temperature | Not entered |
GPS Coordinates | 40.440355 N, 79.948457 W Map |
Discovery Notes | The sample was found on the top layer of damp soil under a bush . The temperature was around 30 degrees Fahrenheit. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Mar 29, 2013 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Ion Torrent Sequencing |
Approximate Shotgun Coverage | 842 |
Sanger Finishing Reactions | 15 |
Genome length (bp) | 69030 |
Character of genome ends | Circularly Permuted |
GC Content | 66.5% |
Sequencing Notes | nt dimorphism at position 33113 (see assembly data) |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | B |
Subcluster | B1 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | The plaques are turbid, about 3mm in diameter, and have a halo. |
Morphotype | Siphoviridae |
Number of Genes | 102 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KJ194580 |
Refseq Number | None yet |
Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
1 |
Pitt Freezer Box Grid# |
B8 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |