Mycobacterium phage Lego3393
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Detailed Information for Phage Lego3393
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByMeghan Muretta
Year Found2011
Location FoundPhiladelphia, PA USA
Finding InstitutionSaint Joseph's University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.992817 N, 75.239675 W Map
Discovery NotesThe soil was collected on Saint Joseph's University's campus from a flower bed beside a concrete walkway between Lafarge Resident Hall and Quirk Resident House. The spot where the soil was taken from was about 1 ft away from foot traffic. The sample was taken 4 cm below the surface and was dry. The temperature when the soil was taken was about 26°C.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2014
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage14694
Genome length (bp)69037
Character of genome endsCircularly Permuted
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterB
SubclusterB1
Cluster Life CycleLytic
Other Cluster Members

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AbsoluteMadLad (B1)

ABU (B1)

AltPhacts (B1)

Altwerkus (B1)

Antonia (B1)

Apizium (B1)

Ashraf (B1)

Badfish (B1)

Banjo (B1)

BatteryCK (B1)

Beaglebox (B1)

Bishoperium (B1)

BlackStallion (B1)

Boehler (B1)

Buckeye (B1)

CamL (B1)

Cannibal (B1)

Carthage (B1)

Chaelin (B1)

Chah (B1)

CharlieGBrown (B1)

CheetO (B1)

Childish (B1)

Chorkpop (B1)

Chunky (B1)

Cobra (B1)

Colbert (B1)

Cosmolli16 (B1)

Craff (B1)

Crownjwl (B1)

Daffy (B1)

Derpp (B1)

Dingo (B1)

Dione (B1)

DirtJuice (B1)

Doddsville (B1)

DoesntMatter (B1)

DonSanchon (B1)

DuchessDung (B1)

Duggie (B1)

Durga (B1)

Emiris (B1)

EmpTee (B1)

Eremos (B1)

Eugenia (B1)

Fang (B1)

FluffyNinja (B1)

FriarPreacher (B1)

Fringe (B1)

FugateOSU (B1)

Gareth (B1)

GeneCoco (B1)

Gophee (B1)

Grand2040 (B1)

Gyarad (B1)

Haimas (B1)

Haleema (B1)

Hamish (B1)

Harvey (B1)

Held (B1)

HenryJackson (B1)

Hertubise (B1)

Hetaeria (B1)

HighStump (B1)

Hocus (B1)

Horchata (B1)

HSavage (B1)

ImtiyazSitla (B1)

Iridoclysis (B1)

IsaacEli (B1)

JacAttac (B1)

JakeO (B1)

JangoPhett (B1)

Jillium (B1)

Jiminy (B1)

Kahve (B1)

Kailash (B1)

Keitherie (B1)

Kikipoo (B1)

Kimbrough (B1)

KingTut (B1)

KingVeVeVe (B1)

KlimbOn (B1)

Kloppinator (B1)

KLucky39 (B1)

Kwadwo (B1)

Kwksand96 (B1)

Labeouficaum (B1)

Lasso (B1)

LeeLot (B1)

Lego3393 (B1)

Legolas (B1)

LemonSlice (B1)

Longacauda (B1)

LuckyMarjie (B1)

Lulumae (B1)

Mag7 (B1)

Mana (B1)

Manad (B1)

Maskar (B1)

Matalotodo (B1)

Mcshane (B1)

Mecca (B1)

Megatron (B1)

Mesh1 (B1)

MichaelPhcott (B1)

Mikota (B1)

MitKao (B1)

Morgushi (B1)

Morty (B1)

Mosaic (B1)

MRabcd (B1)

Mulan (B1)

Murdoc (B1)

Mutante (B1)

Nacho (B1)

Newman (B1)

Numberten (B1)

Oline (B1)

Olive (B1)

OliverWalter (B1)

Omniscient (B1)

Oosterbaan (B1)

Orion (B1)

OSmaximus (B1)

PG1 (B1)

Phamished (B1)

Phareon (B1)

PhatCats2014 (B1)

PhenghisKhan (B1)

Phergie (B1)

Phipps (B1)

Phleuron (B1)

PhrankReynolds (B1)

PhrodoBaggins (B1)

Phunky (B1)

Piglet (B1)

PinheadLarry (B1)

Pinkman (B1)

Pipsqueak (B1)

Placalicious (B1)

Plmatters (B1)

Podrick (B1)

Pops (B1)

Potter (B1)

Prickles (B1)

ProfessorX (B1)

Puhltonio (B1)

QueenBeane (B1)

RedMaple (B1)

Riggan (B1)

Robyn (B1)

Roliet (B1)

Roscoe (B1)

Roy17 (B1)

Samaymay (B1)

SassyCat97 (B1)

Schadenfreude (B1)

Scoot17C (B1)

SDcharge11 (B1)

Serendipity (B1)

Serpentine (B1)

Sheila (B1)

ShiVal (B1)

Sigman (B1)

Skippy (B1)

Slatt (B1)

Solosis (B1)

Sophia (B1)

Soto (B1)

Spartan300 (B1)

Squid (B1)

Squiggle (B1)

Struggle (B1)

Suffolk (B1)

Surely (B1)

Swish (B1)

TallGrassMM (B1)

Telesworld (B1)

Thora (B1)

ThreeOh3D2 (B1)

Timmi (B1)

TomBombadil (B1)

Trypo (B1)

TyrionL (B1)

UAch1 (B1)

UncleHowie (B1)

Vaishali24 (B1)

Valjean (B1)

Vaticameos (B1)

Veritas (B1)

Virapocalypse (B1)

Vista (B1)

Vivaldi (B1)

Vortex (B1)

Wallhey (B1)

Waterdiva (B1)

Windsor (B1)

Xavier (B1)

Yoshand (B1)

YouGoGlencoco (B1)

Zaider (B1)

Zelda (B1)

Zonia (B1)

Imvubu (B10)

Indlovu (B11)

LilMcDreamy (B12)

BirdsNest (B13)

Arbiter (B2)

Ares (B2)

Bananafish (B2)

Boyle (B2)

Brownie5 (B2)

Coffee (B2)

Eaglehorse (B2)

Faze9 (B2)

FrenchFry (B2)

Glass (B2)

Godines (B2)

Hedgerow (B2)

Holeinone (B2)

ItsyBitsy1 (B2)

Kheth (B2)

Laurie (B2)

Lephleur (B2)

LizLemon (B2)

Opia (B2)

Qyrzula (B2)

Rhinoforte (B2)

Rosebush (B2)

Sabella (B2)

TA17a (B2)

Tinciduntsolum (B2)

Tres (B2)

West99 (B2)

Abinghost (B3)

Akoma (B3)

Athena (B3)

Audrey (B3)

Baloo (B3)

Bernardo (B3)

ChaChing (B3)

Chandler (B3)

Compostia (B3)

Corofin (B3)

Daisy (B3)

Gadjet (B3)

Heathcliff (B3)

Jackstina (B3)

Kamiyu (B3)

Marley1013 (B3)

Mortcellus (B3)

Morty007 (B3)

Nozo (B3)

Obutu (B3)

OrangeOswald (B3)

Phaedrus (B3)

Philly (B3)

Phlyer (B3)

Pipefish (B3)

RagingRooster (B3)

Rita1961 (B3)

RomaT (B3)

SynergyX (B3)

Tydolla (B3)

Yahalom (B3)

AlanGrant (B4)

Apex (B4)

BrownCNA (B4)

ChrisnMich (B4)

Cooper (B4)

Fortunato (B4)

Frederick (B4)

Hangman (B4)

JAMaL (B4)

Lolalove (B4)

Magpie (B4)

Mithril (B4)

Nigel (B4)

RawrgerThat (B4)

Stinger (B4)

Vincenzo (B4)

Waleliano (B4)

Zemanar (B4)

Acadian (B5)

Baee (B5)

Donny (B5)

Phelemich (B5)

Reprobate (B5)

Rich (B5)

Serendipitous (B5)

Suigeneris (B5)

39HC (B6)

40BC (B6)

Hosp (B6)

Jolie1 (B6)

KayaCho (B6)

Saguaro (B7)

Thonko (B8)

CRB2 (B9)

Quesadilla (B9)

Annotating InstitutionSaint Joseph's University
Annotation StatusIn GenBank
Plaque NotesThe plaques were clear. The average size of the plaques was about 1.0 - 2.0 mm in diameter. They usually appeared after 24 hours of incubation.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Lego3393_1
(adenylate kinase)

Lego3393_2
(terminase)

Lego3393_3

Lego3393_4

Lego3393_5

Lego3393_6
(RuvC-like resolvase)

Lego3393_7

Lego3393_8
(portal protein)

Lego3393_9
(capsid maturation protease and MuF-like fusion protein)

Lego3393_10
(HNH endonuclease)

Lego3393_11

Lego3393_12
(major capsid protein)

Lego3393_13

Lego3393_14

Lego3393_15

Lego3393_16

Lego3393_17

Lego3393_18
(major tail protein)

Lego3393_19

Lego3393_20
(queuine tRNA-ribosyltransferase)

Lego3393_21

Lego3393_22
(head-to-tail adaptor)

Lego3393_23

Lego3393_24

Lego3393_25
(tail assembly chaperone)

Lego3393_26

Lego3393_27

Lego3393_28
(tape measure protein)

Lego3393_29
(minor tail protein)

Lego3393_30
(minor tail protein)

Lego3393_31
(minor tail protein)

Lego3393_32
(minor tail protein)

Lego3393_33
(minor tail protein)

Lego3393_34

Lego3393_35

Lego3393_36

Lego3393_37

Lego3393_38

Lego3393_39

Lego3393_40

Lego3393_41

Lego3393_42

Lego3393_43

Lego3393_44
(helix-turn-helix DNA binding domain protein)

Lego3393_45

Lego3393_46

Lego3393_47
(lysin A)

Lego3393_48
(lysin B)

Lego3393_49

Lego3393_50

Lego3393_51
(DNA helicase)

Lego3393_52

Lego3393_53

Lego3393_54

Lego3393_55

Lego3393_56

Lego3393_57
(DNA primase/helicase)

Lego3393_58

Lego3393_59
(DNA polymerase I)

Lego3393_60

Lego3393_61

Lego3393_62

Lego3393_63

Lego3393_64

Lego3393_65

Lego3393_66

Lego3393_67

Lego3393_68
(RNase E)

Lego3393_69

Lego3393_70

Lego3393_71

Lego3393_72

Lego3393_73

Lego3393_74

Lego3393_75

Lego3393_76

Lego3393_77

Lego3393_78

Lego3393_79

Lego3393_80

Lego3393_81

Lego3393_82

Lego3393_83

Lego3393_84

Lego3393_85

Lego3393_86

Lego3393_87

Lego3393_88

Lego3393_89

Lego3393_90

Lego3393_91

Lego3393_92

Lego3393_93

Lego3393_94

Lego3393_95

Lego3393_96

Lego3393_97

Lego3393_98

Lego3393_99

Lego3393_100

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX620786
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011STJOLego3393MM
SEA Lysate Titer 2.3e11
Date of SEA Lysate Titering Oct 20, 2011
Pitt Freezer Box# 27
Pitt Freezer Box Grid# 47
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload