| Detailed Information for Phage DirtJuice |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Matthew Scott, Ashley Terry, Jeniya Calloway |
| Year Found | 2019 |
| Location Found | Lodi, CA United States |
| Finding Institution | Virginia Western Community College |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 38.143853 N, 121.311323 W Map |
| Discovery Notes | The soil sample was collected in the back yard of a private residence in Lodi, California with GPS coordinates 38.143853, -121.311323. The soil is noted to have a dry moisture content by touch and light brown color. It has a fine sandy texture with mixed organic materials. The soil type is sandy loam. It was collected in a hot, dry area in full sun with the outside temperature approx. 104°F with low to no humidity |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 9, 2019 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 733 |
| Genome length (bp) | 69166 |
| Character of genome ends | Circularly Permuted |
| GC Content | 66.4% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | B |
| Subcluster | B1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Virginia Western Community College |
| Annotation Status | Being Annotated (Expected completion by 5/1/2020) |
| Plaque Notes | Morphology on plates is noted to be larger and smaller plaques with halos noted around and clearing in the middle that ranges in sizes from 1-2 cm |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Gene List |
|
| Publication Info |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Not in Pitt Archives |
| Available Files |
| Plaque Picture | Download |
