Detailed Information for Phage DirtJuice |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Matthew Scott, Ashley Terry, Jeniya Calloway |
Year Found | 2019 |
Location Found | Lodi, CA United States |
Finding Institution | Virginia Western Community College |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 37°C |
GPS Coordinates | 38.143853 N, 121.311323 W Map |
Discovery Notes | The soil sample was collected in the back yard of a private residence in Lodi, California with GPS coordinates 38.143853, -121.311323. The soil is noted to have a dry moisture content by touch and light brown color. It has a fine sandy texture with mixed organic materials. The soil type is sandy loam. It was collected in a hot, dry area in full sun with the outside temperature approx. 104°F with low to no humidity |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Dec 9, 2019 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 733 |
Genome length (bp) | 69166 |
Character of genome ends | Circularly Permuted |
GC Content | 66.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | B |
Subcluster | B1 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | Virginia Western Community College |
Annotation Status | In GenBank |
Plaque Notes | Morphology on plates is noted to be larger and smaller plaques with halos noted around and clearing in the middle that ranges in sizes from 1-2 cm |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
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Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MT897903 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
103 |
Pitt Freezer Box Grid# |
B2 |
Available Files |
Plaque Picture | Download |
GenBank File for Phamerator | Download |