Detailed Information for Phage GeneCoco |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Alexa Hensal, Lauren Butler, and Amber McGraw |
Year Found | 2014 |
Location Found | Columbus, OH USA |
Finding Institution | The Ohio State University |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 25°C |
GPS Coordinates | 39.998333 N, 83.013297 W Map |
Discovery Notes | The soil sample was collected from approximately 3 inches under a bed of mulch located under a large tree. The tree is located on campus in the area known as The Oval.
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Naming Notes | The name was modified from a character named Glenn Coco who appeared in the 2004 film Mean Girls. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 15, 2015 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 2139 |
Genome length (bp) | 68547 |
Character of genome ends | Circularly Permuted |
GC Content | 66.4% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | B |
Subcluster | B1 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | The Ohio State University |
Annotation Status | In GenBank |
Plaque Notes | Plaques were medium in size, circular in shape, and appeared to have a lysed center surrounded by an opaque halo. |
Morphotype | Siphoviridae |
Number of Genes | 100 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MH479916 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
SEA Lysate Titer |
3.92 X 10 ^19 pfu/ml |
Date of SEA Lysate Titering |
Oct 27, 2014 |
Pitt Freezer Box# |
12 |
Pitt Freezer Box Grid# |
B6 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |