| Detailed Information for Phage RomaT |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Lauren Carter |
| Year Found | 2016 |
| Location Found | Mountain Top, PA USA |
| Finding Institution | University of the Sciences (now St. Joseph's Univ) |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | Not entered |
| GPS Coordinates | 41.164077 N, 75.86752 W Map |
| Discovery Notes | This soul sample was collected in an urban region, in my backyard garden, and in an area of light foot traffic. The ground is flat and it is in an enclosed region far from roads and water but close to trees. |
| Naming Notes | I chose the name "RomaT" because I found the soil sample in my tomato garden and Roma is a type of tomato! |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 16, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 76 |
| Genome length (bp) | 69239 |
| Character of genome ends | Circularly Permuted |
| GC Content | 67.5% |
| Sequencing Notes | This genome was sequenced as part of a DOGEMS sample. |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | B |
| Subcluster | B3 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | University of the Sciences (now St. Joseph's Univ) |
| Annotation Status | In GenBank |
| Plaque Notes | Roma-T has a capsid that measures 60 nanometers and a tail that measures 270 nanometers. This phage is also very temperate and produces plaque sizes of about 1 millimeter. |
| Morphotype | Siphoviridae |
| Number of Genes | 103 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK359357 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
34 |
| Pitt Freezer Box Grid# |
F7 |
| Available Files |
| GenBank File for Phamerator | Download |