| Detailed Information for Phage Virapocalypse |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Ayush Parikh |
| Year Found | 2015 |
| Location Found | Philadelphia, PA USA |
| Finding Institution | Drexel University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | 21°C |
| GPS Coordinates | 39.959694 N, 75.190694 W Map |
| Discovery Notes | Found specifically on September 22nd at 7:05 P.M. Found at soil depth of 5 inches in warm, moist, and relatively loose soil (70 Degrees F). |
| Naming Notes | The name is derived from the large number of phage species present on Earth (and the word apocalypse) |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Mar 14, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 882 |
| Genome length (bp) | 68682 |
| Character of genome ends | Circularly Permuted |
| GC Content | 66.5% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | B |
| Subcluster | B1 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Circular, clear, 4 mm. plaques. Moderate growth pattern. |
| Morphotype | Siphoviridae |
| Number of Genes | 103 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MF919539 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
1.4 X 10^10 pfu/ml |
| Date of SEA Lysate Titering |
Nov 28, 2015 |
| Pitt Freezer Box# |
25 |
| Pitt Freezer Box Grid# |
H5 |
| Available Files |
| Restriction Digest Picture | Download |
| Final DNAMaster File | Download |
| GenBank File for Phamerator | Download |
