Mycobacterium phage FireRed
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Detailed Information for Phage FireRed
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByOptimus Prion
Year Found2013
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Yes
Isolation Temperature35°C
GPS Coordinates34.08 N, 118.4 W Map
Discovery NotesPhage isolation performed in Fall 2013 and genome annotation performed in Spring 2014 by Team Optimus Prion: Joseph Alzagatiti, David Chun, and Benj Jara. Annotation was quality checked by Lei Yeh, Iger Ostreni and Edric Yoon. TA: Khristina Ipapo. Instructor: Jordan Moberg Parker. DNA preparation performed by Krisanavane Reddi. Assembly performed by William Villella (UCLA).

Soil sample collected from a planter adjacent to Shapiro Fountain at UCLA on October 3, 2013.
Naming NotesFireRed Version is a Pokemon reference.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 10, 2014
Sequencing FacilityThe UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage48
Genome length (bp)76217
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesTurbid plaques (possibly lysogenic), average diameter of 4mm.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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FireRed_1

FireRed_2

FireRed_3

FireRed_4

FireRed_5
(terminase, small subunit)

FireRed_6

FireRed_7

FireRed_8
(terminase, large subunit)

FireRed_9

FireRed_10
(portal protein)

FireRed_11
(capsid maturation protease)

FireRed_12
(major capsid protein)

FireRed_13
(head-to-tail connector protein)

FireRed_14
(head-to-tail connector protein)

FireRed_15
(head-to-tail connector protein)

FireRed_16
(head-to-tail connector protein)

FireRed_17
(head-to-tail connector protein)

FireRed_18
(major tail protein)

FireRed_19
(tail assembly chaperone)

FireRed_20
(tail assembly chaperone)

FireRed_21
(HNH endonuclease)

FireRed_22
(tape measure protein)

FireRed_23
(minor tail protein)

FireRed_24
(minor tail protein)

FireRed_25
(minor tail protein)

FireRed_26
(minor tail protein)

FireRed_27
(minor tail protein, D-ala-D-ala carboxypeptidase)

FireRed_28
(minor tail protein)

FireRed_29

FireRed_30
(helix-turn-helix DNA binding domain)

FireRed_31

FireRed_32
(Lysin A)

FireRed_33
(Holin)

FireRed_34

FireRed_35
(Lysin B)

FireRed_36

FireRed_37
(NrdH glutaredoxin)

FireRed_38
(Lsr2 DNA bridging protein)

FireRed_39

FireRed_40

FireRed_41

FireRed_42

FireRed_43

FireRed_44

FireRed_45

FireRed_46

FireRed_47

FireRed_48

FireRed_49

FireRed_50

FireRed_51

FireRed_52

FireRed_53

FireRed_54
(membrane domain protein)

FireRed_55
(integrase, (Y-int))

FireRed_56

FireRed_57

FireRed_58
(immunity repressor)

FireRed_59

FireRed_60

FireRed_61
(pentapeptide repeat protein)

FireRed_62

FireRed_63

FireRed_64

FireRed_65

FireRed_66

FireRed_67

FireRed_68

FireRed_69

FireRed_70

FireRed_71

FireRed_72

FireRed_73
(ssDNA binding protein, ERF family)

FireRed_74

FireRed_75

FireRed_76

FireRed_77

FireRed_78

FireRed_79

FireRed_80

FireRed_81
(HNH endonuclease)

FireRed_82

FireRed_83

FireRed_84

FireRed_85
(DnaB dsDNA helicase)

FireRed_86

FireRed_87
(WhiB family transcription factor)

FireRed_88

FireRed_89

FireRed_90
(holliday junction resolvase)

FireRed_91

FireRed_92
(polynucleotide kinase)

FireRed_93

FireRed_94

FireRed_95
(RNA ligase)

FireRed_96
(helix-turn-helix DNA binding protein)

FireRed_97
(WhiB family transcription factor)

FireRed_98

FireRed_99

FireRed_100

FireRed_101

FireRed_102
(DNA methylase)

FireRed_103
(ssDNA binding protein)

FireRed_104
(ClpP protease)

FireRed_105

FireRed_106

FireRed_107

FireRed_108
(helix-turn-helix DNA binding protein)

FireRed_109
(HNH endonuclease)

FireRed_112

FireRed_113

FireRed_114

FireRed_115

FireRed_116
(DnaQ exonuclease (DNA polymerase III subunit))

FireRed_117

FireRed_118
(RecA DNA Recombinase)

FireRed_119

FireRed_120

FireRed_121

FireRed_122

FireRed_123

FireRed_124

FireRed_125

FireRed_126

FireRed_127

FireRed_128

FireRed_129

FireRed_130

FireRed_131
(helix-turn-helix DNA binding domain)

FireRed_132

FireRed_133

FireRed_134

FireRed_135

FireRed_136

FireRed_137

FireRed_138

FireRed_139

FireRed_140

FireRed_141

FireRed_142

FireRed_143

FireRed_144

FireRed_145

FireRed_146

FireRed_147

FireRed_148

FireRed_149

FireRed_150
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF919506
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload