Mycobacterium phage FireRed
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Detailed Information for Phage FireRed
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByOptimus Prion
Year Found2013
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Yes
Isolation Temperature35°C
GPS Coordinates34.08 N, 118.4 W Map
Discovery NotesPhage isolation performed in Fall 2013 and genome annotation performed in Spring 2014 by Team Optimus Prion: Joseph Alzagatiti, David Chun, and Benj Jara. Annotation was quality checked by Lei Yeh, Iger Ostreni and Edric Yoon. TA: Khristina Ipapo. Instructor: Jordan Moberg Parker. DNA preparation performed by Krisanavane Reddi. Assembly performed by William Villella (UCLA).

Soil sample collected from a planter adjacent to Shapiro Fountain at UCLA on October 3, 2013.
Naming NotesFireRed Version is a Pokemon reference.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 10, 2014
Sequencing FacilityThe UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage48
Genome length (bp)76217
Character of genome ends3' Sticky Overhang
Overhang Length9 bp
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesTurbid plaques (possibly lysogenic), average diameter of 4mm.
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload