Mycobacterium phage IHOP

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Detailed Information for Phage IHOP
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByChristian Zwirner, Christopher Tanner
Year Found2015
Location FoundOrono, ME United States
Finding InstitutionUniversity of Maine, Honors College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 12, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage328
Genome length (bp)75668
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesClear center with turbid halos. 1mm on average in diameter.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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IHOP_1

IHOP_2

IHOP_3

IHOP_4

IHOP_5

IHOP_6
(terminase small subunit)

IHOP_7

IHOP_8
(terminase large subunit)

IHOP_9

IHOP_10
(portal protein)

IHOP_11
(capsid maturation protease)

IHOP_12
(major capsid protein)

IHOP_13

IHOP_14
(head-to-tail connector complex protein)

IHOP_15
(head-to-tail connector complex protein)

IHOP_16

IHOP_17
(head-to-tail connector complex protein)

IHOP_18
(major tail protein)

IHOP_19
(tail assembly chaperone)

IHOP_20
(tail assembly chaperone)

IHOP_21
(endonuclease VII)

IHOP_22
(tape measure protein)

IHOP_23
(minor tail protein)

IHOP_24
(minor tail protein)

IHOP_25
(minor tail protein)

IHOP_26
(minor tail protein)

IHOP_27
(D-ala-D-ala carboxypeptidase)

IHOP_28
(minor tail protein)

IHOP_29

IHOP_30
(helix-turn-helix DNA binding domain protein)

IHOP_31
(membrane protein)

IHOP_32
(lysin A)

IHOP_33
(holin)

IHOP_34

IHOP_35
(lysin B)

IHOP_36
(membrane protein)

IHOP_37
(NrdH-like glutaredoxin)

IHOP_38
(Lsr2-like DNA bridging protein)

IHOP_39

IHOP_40

IHOP_41

IHOP_42

IHOP_43

IHOP_44

IHOP_45

IHOP_46

IHOP_47

IHOP_48

IHOP_49
(membrane protein)

IHOP_50
(integrase)

IHOP_51

IHOP_52
(membrane protein)

IHOP_53
(immunity repressor)

IHOP_54

IHOP_55
(membrane protein)

IHOP_56
(pentapeptide repeat protein)

IHOP_57

IHOP_58

IHOP_59

IHOP_60

IHOP_61

IHOP_62

IHOP_63

IHOP_64

IHOP_65
(exonuclease)

IHOP_66

IHOP_67
(ERF family ssDNA binding protein)

IHOP_68

IHOP_69

IHOP_70

IHOP_71

IHOP_72
(membrane protein)

IHOP_73

IHOP_74
(DprA-like DNA processing chain A)

IHOP_75
(HNH endonuclease)

IHOP_76

IHOP_77

IHOP_78

IHOP_79
(DnaB-like dsDNA helicase)

IHOP_80

IHOP_81
(WhiB family transcription factor)

IHOP_82

IHOP_83

IHOP_84
(holliday junction resolvase)

IHOP_85
(membrane protein)

IHOP_86
(polynucleotide kinase)

IHOP_87

IHOP_88
(membrane protein)

IHOP_89
(RNA ligase)

IHOP_90
(helix-turn-helix DNA binding protein)

IHOP_91
(WhiB family transcription factor)

IHOP_92

IHOP_93

IHOP_94

IHOP_95

IHOP_96

IHOP_97
(endonuclease VII)

IHOP_98
(ssDNA binding protein)

IHOP_99
(ClpP-like protease)

IHOP_100

IHOP_101

IHOP_102

IHOP_103
(helix-turn-helix DNA binding domain protein)

IHOP_104
(HNH endonuclease)

IHOP_107

IHOP_108

IHOP_109
(hydrolase)

IHOP_110
(nucleotide pyrophosphohydrolase)

IHOP_111

IHOP_112
(DNA polymerase III subunit)

IHOP_113

IHOP_114

IHOP_115

IHOP_116

IHOP_117
(RecA-like DNA recombinase)

IHOP_118

IHOP_119

IHOP_120

IHOP_121

IHOP_122

IHOP_123

IHOP_124

IHOP_125

IHOP_126

IHOP_127

IHOP_128

IHOP_129

IHOP_130
(helix-turn-helix DNA binding domain protein)

IHOP_131

IHOP_132

IHOP_133

IHOP_134

IHOP_135

IHOP_136

IHOP_137

IHOP_138

IHOP_139

IHOP_140

IHOP_141

IHOP_142

IHOP_143

IHOP_144

IHOP_145

IHOP_146

IHOP_147

IHOP_148

IHOP_149

IHOP_150

IHOP_151
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH513972
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 23
Pitt Freezer Box Grid# A11
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload