Mycobacterium phage Phaja
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Detailed Information for Phage Phaja
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySavannah Sojka
Year Found2014
Location FoundOrono, ME USA
Finding InstitutionUniversity of Maine, Honors College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates44.9 N, 68.6 W Map
Naming NotesAustin Powers: Goldmember
One of the characters mispronounces "father", and it sounds like "Fahja".
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 14, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage90
Genome length (bp)75685
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesMostly clear, slightly turbid on the edges
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Phaja_1

Phaja_2

Phaja_3

Phaja_4

Phaja_5

Phaja_6
(terminase small subunit)

Phaja_7

Phaja_8
(terminase large subunit)

Phaja_9

Phaja_10
(portal protein)

Phaja_11
(capsid maturation protease)

Phaja_12
(major capsid protein)

Phaja_13

Phaja_14
(head-to-tail connector complex protein)

Phaja_15
(head-to-tail connector complex protein)

Phaja_16

Phaja_17
(head-to-tail connector complex protein)

Phaja_18
(major tail protein)

Phaja_19
(tail assembly chaperone)

Phaja_20
(tail assembly chaperone)

Phaja_21
(endonuclease VII)

Phaja_22
(tape measure protein)

Phaja_23
(minor tail protein)

Phaja_24
(minor tail protein)

Phaja_25
(minor tail protein)

Phaja_26
(minor tail protein)

Phaja_27
(D-ala-D-ala carboxypeptidase)

Phaja_28
(minor tail protein)

Phaja_29

Phaja_30
(helix-turn-helix DNA binding domain protein)

Phaja_31
(membrane protein)

Phaja_32
(lysin A)

Phaja_33
(holin)

Phaja_34

Phaja_35
(lysin B)

Phaja_36
(membrane protein)

Phaja_37
(NrdH-like glutaredoxin)

Phaja_38
(Lsr2-like DNA bridging protein)

Phaja_39

Phaja_40

Phaja_41

Phaja_42

Phaja_43

Phaja_44

Phaja_45

Phaja_46

Phaja_47

Phaja_48

Phaja_49
(membrane protein)

Phaja_50
(integrase)

Phaja_51

Phaja_52
(membrane protein)

Phaja_53
(immunity repressor)

Phaja_54

Phaja_55
(membrane protein)

Phaja_56
(pentapeptide repeat protein)

Phaja_57

Phaja_58

Phaja_59

Phaja_60

Phaja_61

Phaja_62

Phaja_63

Phaja_64

Phaja_65
(exonuclease)

Phaja_66

Phaja_67
(ERF family ssDNA binding protein)

Phaja_68

Phaja_69

Phaja_70

Phaja_71

Phaja_72
(membrane protein)

Phaja_73

Phaja_74
(DprA-like DNA processing chain A)

Phaja_75
(HNH endonuclease)

Phaja_76

Phaja_77

Phaja_78

Phaja_79
(DnaB-like dsDNA helicase)

Phaja_80

Phaja_81
(WhiB family transcription factor)

Phaja_82

Phaja_83

Phaja_84
(holliday junction resolvase)

Phaja_85
(membrane protein)

Phaja_86
(polynucleotide kinase)

Phaja_87

Phaja_88
(membrane protein)

Phaja_89
(RNA ligase)

Phaja_90
(helix-turn-helix DNA binding protein)

Phaja_91
(WhiB family transcription factor)

Phaja_92

Phaja_93

Phaja_94

Phaja_95

Phaja_96

Phaja_97
(endonuclease VII)

Phaja_98
(ssDNA binding protein)

Phaja_99
(ClpP-like protease)

Phaja_100

Phaja_101

Phaja_102

Phaja_103
(helix-turn-helix DNA binding domain protein)

Phaja_104
(HNH endonuclease)

Phaja_107

Phaja_108

Phaja_109
(hydrolase)

Phaja_110
(nucleotide pyrophosphohydrolase)

Phaja_111

Phaja_112
(DNA polymerase III subunit)

Phaja_113

Phaja_114

Phaja_115

Phaja_116

Phaja_117
(RecA-like DNA recombinase)

Phaja_118

Phaja_119

Phaja_120

Phaja_121

Phaja_122

Phaja_123

Phaja_124

Phaja_125

Phaja_126

Phaja_127

Phaja_128

Phaja_129

Phaja_130
(helix-turn-helix DNA binding domain protein)

Phaja_131

Phaja_132

Phaja_133

Phaja_134

Phaja_135

Phaja_136

Phaja_137

Phaja_138

Phaja_139

Phaja_140

Phaja_141

Phaja_142

Phaja_143

Phaja_144

Phaja_145

Phaja_146

Phaja_147

Phaja_148

Phaja_149

Phaja_150

Phaja_151
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH513978
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.72x10^10 (High Titer Lysate)
Date of SEA Lysate Titering Sep 30, 2014
Pitt Freezer Box# 9
Pitt Freezer Box Grid# F6
Available Files
GenBank File for PhameratorDownload