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Mycobacterium phage Rakim
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Detailed Information for Phage Rakim
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByLucia Barker
Year Found2008
Location FoundAshburn, VA USA
Finding InstitutionHoward Hughes Medical Institute
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.069783 N, 77.463 W Map
Discovery NotesPhage was originally named "Napoleon", but renamed because that name was taken.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 3, 2011
Genome length (bp)75706
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesBullseye plaques,
vary in size
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes142
Number of tRNAs2
Has been Phamerated?Yes
Gene List

Click to View

Rakim_1

Rakim_2

Rakim_3

Rakim_4

Rakim_5

Rakim_6
(terminase, small subunit)

Rakim_7

Rakim_8

Rakim_9

Rakim_10
(terminase large subunit)

Rakim_11

Rakim_12
(portal)

Rakim_13

Rakim_14
(major capsid)

Rakim_15

Rakim_16

Rakim_17

Rakim_18

Rakim_19

Rakim_20
(Major Tail Subunit)

Rakim_21
(tail assembly chaperone)

Rakim_22
(tail assembly chaperone)

Rakim_23
(tapemeasure)

Rakim_24
(minor tail)

Rakim_25
(minor tail)

Rakim_26
(minor tail)

Rakim_27
(minor tail)

Rakim_28
(D-ala-D-ala carboxypeptidase)

Rakim_29

Rakim_30

Rakim_31

Rakim_32

Rakim_33
(LysA)

Rakim_34
(holin)

Rakim_35

Rakim_36
(LysB)

Rakim_37

Rakim_38
(NrdH)

Rakim_39
(Lsr2)

Rakim_40

Rakim_41

Rakim_42

Rakim_43

Rakim_44

Rakim_45

Rakim_46

Rakim_47

Rakim_48

Rakim_49

Rakim_50

Rakim_51

Rakim_52

Rakim_53

Rakim_54
(integrase, Tyr)

Rakim_55

Rakim_56

Rakim_57

Rakim_58

Rakim_59

Rakim_60

Rakim_61

Rakim_62

Rakim_63

Rakim_64

Rakim_65

Rakim_66

Rakim_67

Rakim_68

Rakim_69

Rakim_70
(Erf)

Rakim_71

Rakim_72

Rakim_73

Rakim_74

Rakim_75

Rakim_76

Rakim_77

Rakim_78

Rakim_79

Rakim_80

Rakim_81

Rakim_82
(DnaB)

Rakim_83

Rakim_84

Rakim_85

Rakim_86

Rakim_87

Rakim_88

Rakim_89
(Pnk)

Rakim_90

Rakim_91

Rakim_92
(RNA ligase)

Rakim_93

Rakim_94
(WhiB)

Rakim_95

Rakim_96

Rakim_97

Rakim_98

Rakim_99

Rakim_100
(Endo VII)

Rakim_101
(ssDNA binding)

Rakim_102
(ClpP protease)

Rakim_103

Rakim_104

Rakim_105

Rakim_106

Rakim_107

Rakim_110

Rakim_111

Rakim_112

Rakim_113

Rakim_114

Rakim_115
(DnaQ-like)

Rakim_116

Rakim_117
(RecA)

Rakim_118

Rakim_119

Rakim_120

Rakim_121

Rakim_122

Rakim_123

Rakim_124

Rakim_125

Rakim_126

Rakim_127

Rakim_128

Rakim_129

Rakim_130
(ParBc domain)

Rakim_131

Rakim_132

Rakim_133

Rakim_134

Rakim_135

Rakim_136

Rakim_137

Rakim_138

Rakim_139

Rakim_140

Rakim_141

Rakim_142

Rakim_143

Rakim_144

Rakim_145

Rakim_146

Rakim_147

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN006062
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload