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Mycobacterium phage Pumpkin
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Detailed Information for Phage Pumpkin
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByCaitlin Peirce
Year Found2008
Location FoundHolland, MI USA
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.7697 N, 86.1664 W Map
Discovery NotesFrom vegetable compost, clumpy moist soil. Depth 4 cm.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 23, 2009
Sequencing FacilityJoint Genomics Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)74491
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque Notes4 mm bulls-eye morphology after 24 hours of incubation at 37ºC. The center turbid circle has a diameter of 1-2 mm with a clear ring around it.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes143
Number of tRNAs2
Has been Phamerated?Yes
Gene List

Click to View

Pumpkin_1

Pumpkin_2

Pumpkin_3

Pumpkin_4

Pumpkin_5

Pumpkin_6
(small terminase)

Pumpkin_7

Pumpkin_8

Pumpkin_9
(large terminase)

Pumpkin_10

Pumpkin_11
(portal)

Pumpkin_12

Pumpkin_13
(capsid subunit)

Pumpkin_14

Pumpkin_15

Pumpkin_16

Pumpkin_17

Pumpkin_18

Pumpkin_19
(major tail subunit)

Pumpkin_20

Pumpkin_21

Pumpkin_22

Pumpkin_23
(Endo VII)

Pumpkin_24
(tapemeasure protein)

Pumpkin_25
(minor tail protein)

Pumpkin_26
(minor tail protein)

Pumpkin_27

Pumpkin_28

Pumpkin_29

Pumpkin_30
(PPE)

Pumpkin_31

Pumpkin_32

Pumpkin_33

Pumpkin_34
(LysA)

Pumpkin_35

Pumpkin_36

Pumpkin_37
(LysB)

Pumpkin_38

Pumpkin_39
(NrdH)

Pumpkin_40

Pumpkin_41

Pumpkin_42
(Lsr2-like protein)

Pumpkin_43

Pumpkin_44

Pumpkin_45

Pumpkin_46

Pumpkin_47

Pumpkin_48

Pumpkin_49

Pumpkin_50

Pumpkin_51

Pumpkin_52

Pumpkin_53

Pumpkin_54
(integrase)

Pumpkin_55

Pumpkin_56

Pumpkin_57

Pumpkin_58

Pumpkin_59

Pumpkin_60

Pumpkin_61

Pumpkin_62

Pumpkin_63

Pumpkin_64

Pumpkin_65

Pumpkin_66

Pumpkin_67

Pumpkin_68

Pumpkin_69

Pumpkin_70

Pumpkin_71

Pumpkin_72

Pumpkin_73

Pumpkin_74

Pumpkin_75

Pumpkin_76

Pumpkin_77

Pumpkin_78

Pumpkin_79

Pumpkin_80

Pumpkin_81

Pumpkin_82

Pumpkin_83

Pumpkin_84
(DnaB)

Pumpkin_85

Pumpkin_86

Pumpkin_87

Pumpkin_88

Pumpkin_89

Pumpkin_90

Pumpkin_91
(Pnk)

Pumpkin_92

Pumpkin_93

Pumpkin_94

Pumpkin_95
(RNA ligase)

Pumpkin_96

Pumpkin_97
(WhiB)

Pumpkin_98

Pumpkin_99

Pumpkin_100

Pumpkin_101

Pumpkin_102
(SSB)

Pumpkin_103
(Clp)

Pumpkin_104

Pumpkin_105

Pumpkin_106

Pumpkin_107

Pumpkin_110

Pumpkin_111

Pumpkin_112

Pumpkin_113

Pumpkin_114
(pol II)

Pumpkin_115

Pumpkin_116
(RecA)

Pumpkin_117

Pumpkin_118

Pumpkin_119

Pumpkin_120

Pumpkin_121

Pumpkin_122

Pumpkin_123

Pumpkin_124

Pumpkin_125

Pumpkin_126

Pumpkin_127

Pumpkin_128

Pumpkin_129

Pumpkin_130

Pumpkin_131

Pumpkin_132

Pumpkin_133

Pumpkin_134

Pumpkin_135

Pumpkin_136

Pumpkin_137

Pumpkin_138

Pumpkin_139

Pumpkin_140

Pumpkin_141

Pumpkin_142

Pumpkin_143

Pumpkin_144

Pumpkin_145

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionGQ303265
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Virtual Digest PictureDownload
EM PictureDownload