Mycobacterium phage YassJohnny
YassJohnny Plaque Picture
YassJohnny EM Picture
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Detailed Information for Phage YassJohnny
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesYasssJohnny
Found ByTeams Phage and Chill & Trap Phages
Year Found2015
Location FoundLos Angeles, CA United States
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature35°C
GPS Coordinates34.065618 N, 118.454008 W Map
Discovery NotesSoil collected by Johnny Pham. Phage isolated, purified and characterized by Teams Phage and Chill & Trap Phages.

Team Phage and Chill:
Johnny Pham
Sejal Mehta
Judy Vo
Veronica Gonzalez


Team: Trap Phages
Emily Chiu
Annika Taber
Ruoxi Zhang
Jennifer Briones

TA: Fasih Ahsan
Instructor: Giorgia Pirino

Sample description:
-Sample was taken near a root of plant in the garden of an apartment complex in an Urban area. Air temperature:87° F
Depth from which sample was taken: 5 cm
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage913
Genome length (bp)73697
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Sequencing NotesThere is a polymorphism in this genome. At position 28117, about 45% of the reads have a T instead of the currently called consensus C.
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque Notes
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet