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Mycobacterium phage Dusk
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Detailed Information for Phage Dusk
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAbbey Perl
Year Found2010
Location FoundNJ USA
Finding InstitutionLehigh University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.5578 N, 74.8758 W Map
Discovery NotesThis phage was discovered at the bottom of a oak tree. It was taken from a rotting limb from the oak tree. The soil temperature was slightly warm. The soil was moist.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 28, 2011
Genome length (bp)75339
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesThe plaque forms small, 2.5 mm diameter, bullseye plaques. They have a very low infectivity and is very cloudy. It looks as if there is a layer of bacteria ontop of the plaque.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes142
Number of tRNAs2
Has been Phamerated?Yes
Gene List

Click to View

Dusk_1

Dusk_2

Dusk_3

Dusk_4

Dusk_5

Dusk_6
(Terminase Small Subunit)

Dusk_7

Dusk_8
(Terminase Large Subunit)

Dusk_9

Dusk_10
(Portal)

Dusk_11
(Capsid maturation protease)

Dusk_12
(Major Capsid)

Dusk_13

Dusk_14
(Head-tail connector)

Dusk_15
(Head-tail connector)

Dusk_16
(Head-tail connector)

Dusk_17

Dusk_18
(Major Tail Subunit)

Dusk_19
(Tail Assembly Chaperone)

Dusk_20
(Tail Assembly Chaperone)

Dusk_21
(Tapemeasure)

Dusk_22
(Minor Tail)

Dusk_23
(Minor tail)

Dusk_24
(Minor tail)

Dusk_25
(Minor Tail)

Dusk_26
(D-ala-D-ala carboxypeptidase)

Dusk_27

Dusk_28

Dusk_29
(HTH DNA binding)

Dusk_30

Dusk_31
(Lysin A)

Dusk_32
(Holin)

Dusk_33

Dusk_34
(Lysin B)

Dusk_35

Dusk_36
(NrdH-redoxin (NrdH))

Dusk_37
(HNH endonuclease)

Dusk_38

Dusk_39

Dusk_40

Dusk_41

Dusk_42

Dusk_43

Dusk_44

Dusk_45

Dusk_46

Dusk_47

Dusk_48

Dusk_49

Dusk_50
(Integrase (Y-int))

Dusk_51

Dusk_52

Dusk_53
(DNA binding domain)

Dusk_54

Dusk_55
(Pentapeptide repeat)

Dusk_56

Dusk_57

Dusk_58

Dusk_59

Dusk_60

Dusk_61

Dusk_62

Dusk_63

Dusk_64

Dusk_65

Dusk_66
(ERF-like)

Dusk_67

Dusk_68

Dusk_69

Dusk_70

Dusk_71

Dusk_72

Dusk_73

Dusk_74
(HNH endonuclease)

Dusk_75

Dusk_76

Dusk_77

Dusk_78
(DNAB-like helicase)

Dusk_79

Dusk_80

Dusk_81

Dusk_82

Dusk_83
(Holliday junction resolvase)

Dusk_84

Dusk_85
(Polynucleotide Kinase)

Dusk_86

Dusk_87

Dusk_88
(RNA ligase)

Dusk_89
(HTH DNA binding)

Dusk_90
(WhiB)

Dusk_91

Dusk_92

Dusk_93

Dusk_94

Dusk_95

Dusk_96
(DNA methylase)

Dusk_97
(ssDNA binding)

Dusk_98
(CLP protease)

Dusk_99

Dusk_100

Dusk_101

Dusk_102
(HTH DNA binding)

Dusk_103
(HNH homing endonuclease)

Dusk_106

Dusk_107

Dusk_108

Dusk_109

Dusk_110

Dusk_111
(DnaQ-like exonuclease)

Dusk_112

Dusk_113

Dusk_114

Dusk_115

Dusk_116
(RecA)

Dusk_117

Dusk_118

Dusk_119

Dusk_120

Dusk_121

Dusk_122

Dusk_123

Dusk_124

Dusk_125

Dusk_126

Dusk_127

Dusk_128
(HTH DNA binding)

Dusk_129

Dusk_130

Dusk_131

Dusk_132

Dusk_133

Dusk_134

Dusk_135

Dusk_136

Dusk_137

Dusk_138

Dusk_139

Dusk_140

Dusk_141

Dusk_142

Dusk_143

Dusk_144

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKT222942
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE