Mycobacterium phage Emmina
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Detailed Information for Phage Emmina
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByMarina Wright and Emma Dutremble
Year Found2017
Location FoundNorth Andover, MA USA
Finding InstitutionMerrimack College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.67 N, 71.12 W Map
Discovery NotesIt was found in the northeast corner of Mendel Pond, in the mulch. We dug at the base of a lone tree in between the pond and the Welcome Center parking lot.
Naming NotesWe combined our first names to name the phage.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 19, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1386
Genome length (bp)75295
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Emmina_1

Emmina_2

Emmina_3

Emmina_4

Emmina_5

Emmina_6
(terminase, small subunit)

Emmina_7

Emmina_8
(terminase, large subunit)

Emmina_9

Emmina_10
(portal protein)

Emmina_11
(capsid maturation protease)

Emmina_12
(major capsid protein)

Emmina_13

Emmina_14
(head-to-tail connector complex protein)

Emmina_15
(head-to-tail connector complex protein)

Emmina_16

Emmina_17
(head-to-tail connector complex protein)

Emmina_18
(major tail protein)

Emmina_19

Emmina_20
(tail assembly chaperone)

Emmina_21
(tail assembly chaperone)

Emmina_22
(endonuclease VII)

Emmina_23
(tape measure protein)

Emmina_24
(minor tail protein)

Emmina_25
(minor tail protein)

Emmina_26
(minor tail protein)

Emmina_27
(minor tail protein)

Emmina_28
(minor tail protein, D-ala-D-ala carboxypeptidase)

Emmina_29

Emmina_30

Emmina_31
(helix-turn-helix DNA binding domain)

Emmina_32

Emmina_33
(lysin A)

Emmina_34
(holin)

Emmina_35

Emmina_36
(lysin B)

Emmina_37

Emmina_38
(NrdH-like glutaredoxin)

Emmina_39
(Lsr2-like DNA bridging protein)

Emmina_40

Emmina_41

Emmina_42

Emmina_43

Emmina_44

Emmina_45

Emmina_46

Emmina_47

Emmina_48

Emmina_49

Emmina_50

Emmina_51
(membrane protein)

Emmina_52
(integrase, (Y-int))

Emmina_53

Emmina_54
(membrane protein)

Emmina_55
(immunity repressor)

Emmina_56

Emmina_57

Emmina_58
(pentapeptide repeat protein)

Emmina_59

Emmina_60

Emmina_61

Emmina_62

Emmina_63

Emmina_64

Emmina_65

Emmina_66

Emmina_67
(exonuclease)

Emmina_68

Emmina_69
(ssDNA binding protein, ERF family)

Emmina_70

Emmina_71

Emmina_72

Emmina_73

Emmina_74

Emmina_75

Emmina_76
(DprA-like DNA processing chain A)

Emmina_77
(HNH endonuclease)

Emmina_78

Emmina_79

Emmina_80

Emmina_81
(DNAB-like dsDNA helicase)

Emmina_82

Emmina_83
(WhiB family transcription factor)

Emmina_84

Emmina_85

Emmina_86
(Holliday junction resolvase)

Emmina_87
(membrane protein)

Emmina_88
(polynucleotide kinase)

Emmina_89

Emmina_90

Emmina_91
(RNA ligase)

Emmina_92
(helix-turn-helix DNA binding domain)

Emmina_93
(WhiB family transcription factor)

Emmina_94

Emmina_95

Emmina_96

Emmina_97

Emmina_98

Emmina_99
(DNA methylase)

Emmina_100
(ssDNA binding protein)

Emmina_101
(ClpP-like protease)

Emmina_102

Emmina_103

Emmina_104

Emmina_105
(helix-turn-helix DNA binding domain)

Emmina_106
(HNH endonuclease)

Emmina_109

Emmina_110

Emmina_111
(hydrolase)

Emmina_112

Emmina_113
(DnaQ-like exonuclease (DNA polymerase III subunit))

Emmina_114

Emmina_115
(RecA-like DNA Recombinase)

Emmina_116

Emmina_117

Emmina_118

Emmina_119

Emmina_120

Emmina_121

Emmina_122

Emmina_123

Emmina_124

Emmina_125

Emmina_126

Emmina_127
(helix-turn-helix DNA binding domain)

Emmina_128

Emmina_129

Emmina_130

Emmina_131

Emmina_132

Emmina_133

Emmina_134

Emmina_135

Emmina_136

Emmina_137

Emmina_138

Emmina_139

Emmina_140

Emmina_141

Emmina_142

Emmina_143

Emmina_144

Emmina_145

Emmina_146

Emmina_147

Emmina_148
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH669002
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload