Mycobacterium phage xkcd
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Detailed Information for Phage xkcd
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJessica Ruby
Year Found2008
Location FoundSanta Cruz, CA USA
Finding InstitutionUniversity of California, Santa Cruz
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates36.983233 N, 122.061133 W Map
Discovery NotesTaken from potted soil at the UCSC Arboretum, depth 0.5-1 inches, 65°F, low, well-protected, shady, moist
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 16, 2015
Sequencing FacilityUniversity of California, Santa Cruz
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage22
Sanger Finishing Reactions4
Genome length (bp)76915
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content62.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesMedium-sized, slightly under 1 cm on average for lower concentrations. At higher concentrations, shrunk to ~4mm.
Round, slightly turbid, occasional resistant bacterial colonies visible in plaques
24-hour incubations at 37°C
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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xkcd_1

xkcd_2

xkcd_3

xkcd_4

xkcd_5

xkcd_6

xkcd_7

xkcd_8

xkcd_9
(terminase)

xkcd_10

xkcd_11
(portal protein)

xkcd_12
(capsid maturation protease)

xkcd_13
(major capsid protein)

xkcd_14

xkcd_15
(head-to-tail connector complex protein)

xkcd_16
(head-to-tail connector complex protein)

xkcd_17

xkcd_18
(head-to-tail connector complex protein)

xkcd_19
(major tail protein)

xkcd_20
(tail assembly chaperone)

xkcd_21
(tail assembly chaperone)

xkcd_22
(endonuclease VII)

xkcd_23
(tape measure protein)

xkcd_24
(minor tail protein)

xkcd_25
(minor tail protein)

xkcd_26

xkcd_27
(minor tail protein)

xkcd_28
(minor tail protein)

xkcd_29

xkcd_30

xkcd_31

xkcd_32

xkcd_33
(lysin A)

xkcd_34
(holin)

xkcd_35

xkcd_36
(lysin B)

xkcd_37

xkcd_38
(ThyX-like thioredoxin)

xkcd_39
(Lsr2-like DNA bridging protein)

xkcd_40

xkcd_41

xkcd_42

xkcd_43

xkcd_44

xkcd_45

xkcd_46

xkcd_47

xkcd_48

xkcd_49

xkcd_50

xkcd_51

xkcd_52

xkcd_53

xkcd_54

xkcd_55

xkcd_56
(integrase)

xkcd_57

xkcd_58

xkcd_59
(immunity repressor)

xkcd_60

xkcd_61

xkcd_62

xkcd_63

xkcd_64

xkcd_65

xkcd_66

xkcd_67

xkcd_68

xkcd_69

xkcd_70

xkcd_71

xkcd_72
(Erf family ssDNA binding protein)

xkcd_73

xkcd_74

xkcd_75

xkcd_76

xkcd_77

xkcd_78

xkcd_79
(DprA-like DNA processing chain)

xkcd_80
(HNH endonuclease)

xkcd_81

xkcd_82

xkcd_83

xkcd_84
(helicase)

xkcd_85

xkcd_86
(WhiB family transcription factor)

xkcd_87

xkcd_88

xkcd_89
(RusA-like resolvase)

xkcd_90

xkcd_91
(polynucleotide kinase)

xkcd_92

xkcd_93

xkcd_94
(RNA ligase)

xkcd_95
(HTH DNA binding protein)

xkcd_96
(WhiB family transcription factor)

xkcd_97

xkcd_98

xkcd_99

xkcd_100

xkcd_101

xkcd_102
(HNH endonuclease)

xkcd_103

xkcd_104
(ClpP-like protease)

xkcd_105

xkcd_106

xkcd_107

xkcd_108

xkcd_109
(HNH endonuclease)

xkcd_110

xkcd_113

xkcd_114

xkcd_115

xkcd_116

xkcd_117
(DnaQ-like exonuclease)

xkcd_118

xkcd_119
(RecA-like recombinase)

xkcd_120

xkcd_121

xkcd_122

xkcd_123

xkcd_124

xkcd_125

xkcd_126

xkcd_127

xkcd_128

xkcd_129

xkcd_130

xkcd_131

xkcd_132

xkcd_133

xkcd_134

xkcd_135

xkcd_136

xkcd_137

xkcd_138

xkcd_139

xkcd_140

xkcd_141

xkcd_142

xkcd_143

xkcd_144

xkcd_145

xkcd_146

xkcd_147

xkcd_148

xkcd_149

xkcd_150

xkcd_151

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH590587
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator 2008UCSCxkcdJAR
SEA Lysate Titer 1.8x10^10
Pitt Freezer Box# 6
Pitt Freezer Box Grid# 68
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload