Mycobacterium phage Dumbo
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Detailed Information for Phage Dumbo
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDaniel Peace, Joshua Whalen, Cody Tracy
Year Found2011
Location FoundFort Kent, ME USA
Finding InstitutionUniversity of Maine, Fort Kent
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates47.254722 N, 68.586972 W Map
Discovery NotesPhage was isolated from soil located in an on-campus greenhouse
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 25, 2012
Approximate Shotgun Coverage300
Genome length (bp)75736
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesPhages isolated were very large in size and had abnormally long tails.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes147
Number of tRNAs2
Has been Phamerated?Yes
Gene List

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Dumbo_1

Dumbo_2

Dumbo_3

Dumbo_4

Dumbo_5
(terminase, small subunit)

Dumbo_6

Dumbo_7

Dumbo_8
(terminase, large subunit)

Dumbo_9

Dumbo_10
(portal)

Dumbo_11
(capsid maturation protease)

Dumbo_12
(major capsid protein)

Dumbo_13

Dumbo_14

Dumbo_15

Dumbo_16

Dumbo_17

Dumbo_18
(major tail subunit)

Dumbo_19

Dumbo_20
(tail assembly chaperone)

Dumbo_21
(tail assembly chaperone)

Dumbo_22
(tapemeasure)

Dumbo_23
(minor tail protein)

Dumbo_24
(minor tail protein)

Dumbo_25
(minor tail protein)

Dumbo_26
(minor tail protein)

Dumbo_27
(D-ala-D-ala carboxypeptidase)

Dumbo_28

Dumbo_29

Dumbo_30

Dumbo_31

Dumbo_32
(Lysin A)

Dumbo_33
(holin)

Dumbo_34

Dumbo_35
(Lysin B)

Dumbo_36

Dumbo_37
(NrdH-like)

Dumbo_38

Dumbo_39
(Lsr2)

Dumbo_40

Dumbo_41

Dumbo_42

Dumbo_43

Dumbo_44

Dumbo_45

Dumbo_46

Dumbo_47

Dumbo_48

Dumbo_49

Dumbo_50

Dumbo_51

Dumbo_52
(Integrase (Y-int))

Dumbo_53

Dumbo_54

Dumbo_55
(immunity repressor)

Dumbo_56

Dumbo_57

Dumbo_58
(pentapepetide repeat family)

Dumbo_59

Dumbo_60

Dumbo_61

Dumbo_62

Dumbo_63

Dumbo_64

Dumbo_65

Dumbo_66

Dumbo_67

Dumbo_68

Dumbo_69
(Erf)

Dumbo_70

Dumbo_71

Dumbo_72

Dumbo_73

Dumbo_74

Dumbo_75

Dumbo_76

Dumbo_77
(HNH endonuclease domain)

Dumbo_78

Dumbo_79

Dumbo_80

Dumbo_81
(DnaB-like helicase)

Dumbo_82

Dumbo_83

Dumbo_84

Dumbo_85

Dumbo_86

Dumbo_87

Dumbo_88
(Pnk)

Dumbo_89

Dumbo_90

Dumbo_91
(RNA ligase)

Dumbo_92

Dumbo_93
(WhiB)

Dumbo_94

Dumbo_95

Dumbo_96

Dumbo_97

Dumbo_98

Dumbo_99
(DNA methylase)

Dumbo_100
(ssDNA binding protein)

Dumbo_101
(Clp protease)

Dumbo_102

Dumbo_103

Dumbo_104

Dumbo_105

Dumbo_106

Dumbo_109

Dumbo_110

Dumbo_111

Dumbo_112

Dumbo_113
(DnaQ-like exonuclease)

Dumbo_114

Dumbo_115
(RecA)

Dumbo_116

Dumbo_117

Dumbo_118

Dumbo_119

Dumbo_120

Dumbo_121

Dumbo_122

Dumbo_123

Dumbo_124

Dumbo_125

Dumbo_126

Dumbo_127

Dumbo_128

Dumbo_129

Dumbo_130

Dumbo_131

Dumbo_132

Dumbo_133

Dumbo_134

Dumbo_135

Dumbo_136

Dumbo_137

Dumbo_138

Dumbo_139

Dumbo_140

Dumbo_141

Dumbo_142

Dumbo_143

Dumbo_144

Dumbo_145

Dumbo_146

Dumbo_147

Dumbo_148

Dumbo_149
(HNH endonuclease domain)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKC691255
Refseq NumberNC_021306
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
EM PictureDownload