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Mycobacterium phage Contagion
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Detailed Information for Phage Contagion
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPaola Lockwood
Year Found2011
Location FoundWestchester, CA USA
Finding InstitutionLoyola Marymount University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates33.969875 N, 118.420014 W Map
Discovery NotesSunny day approximately 69°F. Located on the campus of LMU by the sophomore housing, specifically the covered garden in front of McCarthy Hall. Soil sample was taken 2-3inches below the surface by a blossoming tree's roots. Other plants (flowers,grass) were in the near area. The dirt was moist.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 12, 2012
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage80
Genome length (bp)74533
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesLysogenic. Fuzzy concentric rings around a cock-eye lysed center. Approximately 0.1 cm in diameter after 24-48 hours.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes140
Number of tRNAs2
Has been Phamerated?Yes
Gene List

Click to View

Contagion_1

Contagion_2

Contagion_3

Contagion_4

Contagion_5
(terminase, small subunit)

Contagion_6

Contagion_7

Contagion_8
(terminase, large subunit)

Contagion_9

Contagion_10
(portal)

Contagion_11
(capsid maturaiton protease)

Contagion_12
(major capsid protein)

Contagion_13

Contagion_14

Contagion_15

Contagion_16

Contagion_17

Contagion_18
(major tail subunit)

Contagion_19
(tail assembly chaperone)

Contagion_20
(tail assembly chaperone)

Contagion_21
(tapemeasure)

Contagion_22
(minor tail protein)

Contagion_23
(minor tail protein)

Contagion_24
(minor tail protein)

Contagion_25
(minor tail protein)

Contagion_26
(D-ala-D-ala carboxypeptidase)

Contagion_27

Contagion_28

Contagion_29

Contagion_30

Contagion_31
(Lysin A)

Contagion_32
(holin)

Contagion_33

Contagion_34
(Lysin B)

Contagion_35

Contagion_36
(NrdH)

Contagion_37

Contagion_38

Contagion_39
(Lsr2)

Contagion_40

Contagion_41

Contagion_42

Contagion_43

Contagion_44

Contagion_45

Contagion_46

Contagion_47

Contagion_48

Contagion_49
(Integrase (Y-int))

Contagion_50

Contagion_51

Contagion_52
(immunity repressor)

Contagion_53

Contagion_54

Contagion_55
(pentapeptide repeat domain)

Contagion_56

Contagion_57

Contagion_58

Contagion_59

Contagion_60

Contagion_61

Contagion_62

Contagion_63

Contagion_64

Contagion_65
(Erf)

Contagion_66

Contagion_67

Contagion_68

Contagion_69

Contagion_70

Contagion_71

Contagion_72

Contagion_73
(HNH endonuclease domain)

Contagion_74

Contagion_75

Contagion_76

Contagion_77
(DnaB-like Helicase)

Contagion_78

Contagion_79

Contagion_80

Contagion_81

Contagion_82

Contagion_83

Contagion_84
(Pnk)

Contagion_85

Contagion_86

Contagion_87
(RNA ligase)

Contagion_88

Contagion_89
(WhiB)

Contagion_90

Contagion_91

Contagion_92

Contagion_93

Contagion_94

Contagion_95
(DNA methylase)

Contagion_96
(ssDNA binding protein)

Contagion_97
(Clp protease)

Contagion_98

Contagion_99

Contagion_100

Contagion_101

Contagion_102

Contagion_103

Contagion_106

Contagion_107

Contagion_108

Contagion_109

Contagion_110
(DnaQ-like exonuclease)

Contagion_111

Contagion_112
(RecA)

Contagion_113

Contagion_114

Contagion_115

Contagion_116

Contagion_117

Contagion_118

Contagion_119

Contagion_120

Contagion_121

Contagion_122

Contagion_123

Contagion_124

Contagion_125

Contagion_126

Contagion_127

Contagion_128

Contagion_129

Contagion_130

Contagion_131

Contagion_132

Contagion_133

Contagion_134

Contagion_135

Contagion_136

Contagion_137

Contagion_138

Contagion_139

Contagion_140

Contagion_141

Contagion_142
(HNH endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF024732
Refseq NumberNC_022065
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload