Mycobacterium phage ABCat
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Detailed Information for Phage ABCat
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByCatherine Cota
Year Found2011
Location FoundNew Haven, CT USA
Finding InstitutionSouthern Connecticut State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates41.33 N, 72.948 W Map
Discovery NotesSoil Sample
Slightly Damp
3 cm deep
70°F
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 31, 2012
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage170
Genome length (bp)76131
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque Notes1mm cloudy plaques at 48-72 hours
MorphotypeSiphoviridae
Number of Genes143
Number of tRNAs2
Has been Phamerated?Yes
Gene List

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ABCat_1

ABCat_2

ABCat_3

ABCat_4

ABCat_5

ABCat_6
(terminase small subunit)

ABCat_7

ABCat_8
(terminase large subunit)

ABCat_9

ABCat_10
(portal protein)

ABCat_11
(capsid maturation protease)

ABCat_12
(major capsid protein)

ABCat_13

ABCat_14

ABCat_15

ABCat_16

ABCat_17

ABCat_18
(major tail subunit)

ABCat_19
(tail assembly chaperone)

ABCat_20
(tail assembly chaperone)

ABCat_21
(tapemeasure)

ABCat_22
(minor tail protein)

ABCat_23
(minor tail protein)

ABCat_24
(minor tail protein)

ABCat_25
(minor tail protein)

ABCat_26
(D-ala-D-ala carboxypeptidase)

ABCat_27

ABCat_28

ABCat_29

ABCat_30

ABCat_31
(lysin A)

ABCat_32
(holin)

ABCat_33

ABCat_34
(lysin B)

ABCat_35

ABCat_36
(NrdH-like protein)

ABCat_37
(HNH endonuclease)

ABCat_38
(Lsr2)

ABCat_39

ABCat_40

ABCat_41

ABCat_42

ABCat_43

ABCat_44

ABCat_45

ABCat_46

ABCat_47

ABCat_48

ABCat_49

ABCat_50
(integrase)

ABCat_51

ABCat_52

ABCat_53
(immunity repressor)

ABCat_54

ABCat_55

ABCat_56
(pentapeptide repeat family protein)

ABCat_57

ABCat_58

ABCat_59

ABCat_60

ABCat_61

ABCat_62

ABCat_63

ABCat_64

ABCat_65

ABCat_66
(Erf protein)

ABCat_67

ABCat_68

ABCat_69

ABCat_70

ABCat_71

ABCat_72

ABCat_73

ABCat_74
(HNH endonuclease domain protein)

ABCat_75

ABCat_76

ABCat_77

ABCat_78
(DnaB-like helicase)

ABCat_79

ABCat_80

ABCat_81

ABCat_82

ABCat_83

ABCat_84

ABCat_85
(Pnk)

ABCat_86

ABCat_87

ABCat_88
(RNA ligase)

ABCat_89

ABCat_90
(WhiB)

ABCat_91

ABCat_92

ABCat_93

ABCat_94

ABCat_95

ABCat_96
(DNA methylase)

ABCat_97
(ssDNA binding protein)

ABCat_98
(Clp protease)

ABCat_99

ABCat_100

ABCat_101

ABCat_102

ABCat_103

ABCat_106

ABCat_107

ABCat_108

ABCat_109

ABCat_110

ABCat_111
(DnaQ-like exonuclease)

ABCat_112

ABCat_113

ABCat_114

ABCat_115

ABCat_116
(RecA)

ABCat_117

ABCat_118

ABCat_119

ABCat_120

ABCat_121

ABCat_122

ABCat_123

ABCat_124

ABCat_125

ABCat_126

ABCat_127

ABCat_128

ABCat_129

ABCat_130

ABCat_131

ABCat_132

ABCat_133

ABCat_134

ABCat_135

ABCat_136

ABCat_137

ABCat_138

ABCat_139

ABCat_140

ABCat_141

ABCat_142

ABCat_143

ABCat_144

ABCat_145
(HNH endonuclease domain protein)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF188414
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011SCSUabcatCFC
Pitt Freezer Box# 27
Pitt Freezer Box Grid# 43
Available Files
Plaque PictureDownload
EM PictureDownload