The Actinobacteriophage Database

Mycobacterium phage PhatBacter

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Detailed Information for Phage PhatBacter
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Former names	Feige
Found By	Caldwell K, Feige J, Ho M, and Kawas N et al.
Year Found	2011
Location Found	Los Angeles, CA USA
Finding Institution	University of California, Los Angeles
Program	Unavailable
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	34.066 N, 118.45 W Map
Discovery Notes	Phage isolation performed by Kevin Caldwell, Jinal Feige, Michelle Ho, and Neal Kawas (fall 2011). DNA preparation performed by Krisanavane Reddi. Assembly performed by William Villella (UCLA) and confirmed by Daniel Russell (University of Pittsburgh). Preliminary genome annotation performed by Chase Fong, Ariel Hamill, Tae Wuk Ko, and Ethan Sim (winter 2013). Curation of annotation results performed by Tiffany Chow (spring 2013, UCLA) and Debbie Jacobs-Sera (summer 2013, University of Pittsburgh). Soil sample collected by Jinal Feige from apartment planter near UCLA.
Naming Notes	Prior name of phage was Feige. Changed to PhatBacter in May 2013.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	May 13, 2013
Sequencing Facility	The UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method	454 Pyrosequencing
Approximate Shotgun Coverage	238
Genome length (bp)	76217
Character of genome ends	3' Sticky Overhang
Overhang Length	9 bases
Overhang Sequence	CGCTTGTCA
GC Content	63.0%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	E
Subcluster	--
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View 244 ABCat Adnama Amao AmericanBeauty Argent26 Asriel BaboJay BadStone Balomoji Barbarian Bask21 Bench BigBubba BilboSwaggins Bruin Buck BugsBunny Cactus ChosenOne ChotaBhai Cjw1 Command613 Contagion Cookies CrystalP Czyszczon1 Daikon DoctorDiddles DrDrey Dumbo Dusk Easy2Say Elite2014 Elph10 Emmina Eureka Filch FireRed Flypotenuse Gage Gator Gemini Glexan Goku GoldenSpark Goldilocks GooberAzure HanKaySha Harella Henry Highbury Holt Hoonter Hopey HufflyPuff Icee IHOP Inca JeTaime Kanye Kimchi Kostya Lilac Lilizi Lilpickle MadamMonkfish Manda Marshmallow Maxxinista Mindy Miniwave Misfit MISSy Moldemort Mosby MPhalcon Murica Murphy Myrale Nala NelitzaMV Nimrod NoSleep OrionPax Palpatine Paperbeatsrock Pat3 Petra64142 Phaja Pharsalus PhatBacter Phaux Phrux Policronamos Porky Pumpkin Quallification Rakim Rimmer RiverMonster Saints25 Sassay ShamWow ShereKhan Simpliphy SirDuracell SophKB Sotrice96 Stank Stark StellaBean StolenFromERC Tarkin TBrady12 TeardropMSU Teaspoon Terminus Thresher Tomaszewski Toto Traaww1 Tuco Ukulele Wiggin Willez Xandras xkcd YassJohnny Youngblood
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	Turbid plaques with average diameter of 4 mm
Morphotype	Siphoviridae
Number of Genes	148
Number of tRNAs	2
Has been Phamerated?	Yes
Gene List	Click to View PhatBacter_1 PhatBacter_2 PhatBacter_3 PhatBacter_4 PhatBacter_5 (terminase small subunit) PhatBacter_6 PhatBacter_7 PhatBacter_8 (terminase large subunit) PhatBacter_9 PhatBacter_10 (portal protein) PhatBacter_11 (capsid maturation protease) PhatBacter_12 (major capsid protein) PhatBacter_13 PhatBacter_14 (head-to-tail adaptor) PhatBacter_15 (head-to-tail stopper) PhatBacter_16 PhatBacter_17 (tail terminator) PhatBacter_18 (major tail protein) PhatBacter_19 (tail assembly chaperone) PhatBacter_20 (tail assembly chaperone) PhatBacter_21 (HNH domain protein) PhatBacter_22 (tape measure protein) PhatBacter_23 (minor tail protein) PhatBacter_24 (minor tail protein) PhatBacter_25 (minor tail protein) PhatBacter_26 (minor tail protein) PhatBacter_27 (D-Ala-D-Ala carboxypeptidase) PhatBacter_28 PhatBacter_29 PhatBacter_30 PhatBacter_31 PhatBacter_32 (lysin A) PhatBacter_33 (holin) PhatBacter_34 PhatBacter_35 (LysB) PhatBacter_36 PhatBacter_37 (NrdH) PhatBacter_38 (Lsr2-like protein) PhatBacter_39 PhatBacter_40 PhatBacter_41 PhatBacter_42 PhatBacter_43 PhatBacter_44 PhatBacter_45 PhatBacter_46 PhatBacter_47 PhatBacter_48 PhatBacter_49 PhatBacter_50 PhatBacter_51 PhatBacter_52 PhatBacter_53 PhatBacter_54 PhatBacter_55 (tyrosine integrase) PhatBacter_56 PhatBacter_57 PhatBacter_58 PhatBacter_59 PhatBacter_60 PhatBacter_61 (pentapeptide repeat protein) PhatBacter_62 PhatBacter_63 PhatBacter_64 PhatBacter_65 PhatBacter_66 PhatBacter_67 PhatBacter_68 PhatBacter_69 PhatBacter_70 PhatBacter_71 PhatBacter_72 PhatBacter_73 (ssDNA binding protein, ERF family) PhatBacter_74 PhatBacter_75 PhatBacter_76 PhatBacter_77 PhatBacter_78 PhatBacter_79 PhatBacter_80 PhatBacter_81 (HNH domain protein) PhatBacter_82 PhatBacter_83 PhatBacter_84 PhatBacter_85 (DnaB-like helicase) PhatBacter_86 PhatBacter_87 (WhiB family transcription factor) PhatBacter_88 PhatBacter_89 PhatBacter_90 PhatBacter_91 PhatBacter_92 (polynucleotide kinase) PhatBacter_93 PhatBacter_94 PhatBacter_95 (RNA ligase) PhatBacter_96 PhatBacter_97 (WhiB) PhatBacter_98 PhatBacter_99 PhatBacter_100 PhatBacter_101 PhatBacter_102 (DNA methylase) PhatBacter_103 (ssDNA binding protein) PhatBacter_104 (ClpP-like protease) PhatBacter_105 PhatBacter_106 PhatBacter_107 PhatBacter_108 PhatBacter_109 PhatBacter_112 PhatBacter_113 PhatBacter_114 PhatBacter_115 PhatBacter_116 (DnaQ-like DNA polymerase III subunit) PhatBacter_117 PhatBacter_118 (RecA-like DNA recombinase) PhatBacter_119 PhatBacter_120 PhatBacter_121 PhatBacter_122 PhatBacter_123 PhatBacter_124 PhatBacter_125 PhatBacter_126 PhatBacter_127 PhatBacter_128 PhatBacter_129 PhatBacter_130 PhatBacter_131 PhatBacter_132 PhatBacter_133 PhatBacter_134 PhatBacter_135 PhatBacter_136 PhatBacter_137 PhatBacter_138 PhatBacter_139 PhatBacter_140 PhatBacter_141 PhatBacter_142 PhatBacter_143 PhatBacter_144 PhatBacter_145 PhatBacter_146 PhatBacter_147 PhatBacter_148 PhatBacter_149 PhatBacter_150 (HNH domain protein)
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KF562102
Refseq Number	NC_022969
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	3
Pitt Freezer Box Grid#	E10
Available Files
Plaque Picture	Download
EM Picture	Download
Final DNAMaster File	Download

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