Mycobacterium phage PhatBacter
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Detailed Information for Phage PhatBacter
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesFeige
Found ByCaldwell K, Feige J, Ho M, and Kawas N et al.
Year Found2011
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates34.066 N, 118.45 W Map
Discovery NotesPhage isolation performed by Kevin Caldwell, Jinal Feige, Michelle Ho, and Neal Kawas (fall 2011). DNA preparation performed by Krisanavane Reddi. Assembly performed by William Villella (UCLA) and confirmed by Daniel Russell (University of Pittsburgh). Preliminary genome annotation performed by Chase Fong, Ariel Hamill, Tae Wuk Ko, and Ethan Sim (winter 2013). Curation of annotation results performed by Tiffany Chow (spring 2013, UCLA) and Debbie Jacobs-Sera (summer 2013, University of Pittsburgh).

Soil sample collected by Jinal Feige from apartment planter near UCLA.
Naming NotesPrior name of phage was Feige. Changed to PhatBacter in May 2013.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 13, 2013
Sequencing FacilityThe UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage238
Genome length (bp)76217
Character of genome ends3' Sticky Overhang
Overhang Length9 bp
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesTurbid plaques with average diameter of 4 mm
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes148
Number of tRNAs2
Has been Phamerated?Yes
Gene List

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PhatBacter_1

PhatBacter_2

PhatBacter_3

PhatBacter_4

PhatBacter_5
(Terminse, small subunit)

PhatBacter_6

PhatBacter_7

PhatBacter_8
(Terminse, large subunit)

PhatBacter_9

PhatBacter_10
(Portal)

PhatBacter_11
(Capsid maturation protease)

PhatBacter_12
(Major Capsid)

PhatBacter_13

PhatBacter_14

PhatBacter_15

PhatBacter_16

PhatBacter_17

PhatBacter_18
(Major Tail)

PhatBacter_19
(Tail Assembly Chaperone)

PhatBacter_20
(Tail Assembly Chaperone)

PhatBacter_21
(HNH domain)

PhatBacter_22
(Tapemeasure)

PhatBacter_23
(Minor Tail)

PhatBacter_24
(Minor Tail)

PhatBacter_25
(Minor Tail)

PhatBacter_26
(Minor Tail)

PhatBacter_27
(D-ala-D-ala carboxypeptidase)

PhatBacter_28

PhatBacter_29

PhatBacter_30

PhatBacter_31

PhatBacter_32
(LysA)

PhatBacter_33
(Holin)

PhatBacter_34

PhatBacter_35
(LysB)

PhatBacter_36

PhatBacter_37
(NrdH)

PhatBacter_38
(Lsr2-like)

PhatBacter_39

PhatBacter_40

PhatBacter_41

PhatBacter_42

PhatBacter_43

PhatBacter_44

PhatBacter_45

PhatBacter_46

PhatBacter_47

PhatBacter_48

PhatBacter_49

PhatBacter_50

PhatBacter_51

PhatBacter_52

PhatBacter_53

PhatBacter_54

PhatBacter_55
(Integrase (T-Int))

PhatBacter_56

PhatBacter_57

PhatBacter_58

PhatBacter_59

PhatBacter_60

PhatBacter_61
(Pentapeptide repeat)

PhatBacter_62

PhatBacter_63

PhatBacter_64

PhatBacter_65

PhatBacter_66

PhatBacter_67

PhatBacter_68

PhatBacter_69

PhatBacter_70

PhatBacter_71

PhatBacter_72

PhatBacter_73
(Erf)

PhatBacter_74

PhatBacter_75

PhatBacter_76

PhatBacter_77

PhatBacter_78

PhatBacter_79

PhatBacter_80

PhatBacter_81
(HNH domain)

PhatBacter_82

PhatBacter_83

PhatBacter_84

PhatBacter_85
(DnaB-like helicase)

PhatBacter_86

PhatBacter_87

PhatBacter_88

PhatBacter_89

PhatBacter_90

PhatBacter_91

PhatBacter_92
(Pnk)

PhatBacter_93

PhatBacter_94

PhatBacter_95
(RNA ligase)

PhatBacter_96

PhatBacter_97
(WhiB)

PhatBacter_98

PhatBacter_99

PhatBacter_100

PhatBacter_101

PhatBacter_102
(DNA methylase)

PhatBacter_103
(ssDNA bnding)

PhatBacter_104
(Clp protease)

PhatBacter_105

PhatBacter_106

PhatBacter_107

PhatBacter_108

PhatBacter_109

PhatBacter_112

PhatBacter_113

PhatBacter_114

PhatBacter_115

PhatBacter_116
(DnaQ-like)

PhatBacter_117

PhatBacter_118
(RecA)

PhatBacter_119

PhatBacter_120

PhatBacter_121

PhatBacter_122

PhatBacter_123

PhatBacter_124

PhatBacter_125

PhatBacter_126

PhatBacter_127

PhatBacter_128

PhatBacter_129

PhatBacter_130

PhatBacter_131

PhatBacter_132

PhatBacter_133

PhatBacter_134

PhatBacter_135

PhatBacter_136

PhatBacter_137

PhatBacter_138

PhatBacter_139

PhatBacter_140

PhatBacter_141

PhatBacter_142

PhatBacter_143

PhatBacter_144

PhatBacter_145

PhatBacter_146

PhatBacter_147

PhatBacter_148

PhatBacter_149

PhatBacter_150
(HNH domain)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF562102
Refseq NumberNC_022969
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload